Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00505 ATGGCCGAGGAGGGACAAGTGATCGGCGTCCACACCGTTGATGCGTGGAAGCAACATCTCGAGAAGGGAAATGAGAACAAGAAATTGGTTATTACCCCCAAACTTATTGTAGTGGATTTTACTGCTTCTTGGTGTGGCCCATGCCGTTTCATTGCCCCAATTCTTGCAGAGATTGCTAAAAAGCTGCCGGATGTCACCTTCCTTAAGGTCGATGTGGATGAATTGAAGACTGTTGCTGAGGAGTGGGGTGTTGAGGCTATGCCAACCTTCCTGTTCTTAAAAGAAGGCAAACTAGTGGACAAGGTTGTGGGCGCTAAGAAGGAGGAGCTGCAGCTTACAATAAGCAAGCATGCTACTGCTGCTGCTTGA 369 0.4824 MAEEGQVIGVHTVDAWKQHLEKGNENKKLVITPKLIVVDFTASWCGPCRFIAPILAEIAKKLPDVTFLKVDVDELKTVAEEWGVEAMPTFLFLKEGKLVDKVVGAKKEELQLTISKHATAAA. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00505 122 ProSitePatterns Thioredoxin family active site. 37 55 IPR017937 -
Seca4g00505 122 PRINTS Thioredoxin family signature 83 94 - -
Seca4g00505 122 PRINTS Thioredoxin family signature 36 44 - -
Seca4g00505 122 PRINTS Thioredoxin family signature 44 53 - -
Seca4g00505 122 SUPERFAMILY Thioredoxin-like 7 117 IPR036249 -
Seca4g00505 122 CDD TRX_family 27 109 - -
Seca4g00505 122 PANTHER THIOREDOXIN 7 116 - -
Seca4g00505 122 FunFam Thioredoxin 6 119 - -
Seca4g00505 122 Gene3D Glutaredoxin 1 121 - -
Seca4g00505 122 ProSiteProfiles Thioredoxin domain profile. 1 119 IPR013766 -
Seca4g00505 122 Pfam Thioredoxin 27 114 IPR013766 -
Seca4g00505 122 NCBIfam thioredoxin 26 117 IPR005746 GO:0015035
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00505 Seca-Chr4 8244868 8246675 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00505 4 8244868 8246675 Seca4g00505 4 8244868 8246675 ECH
Seca4g00505 4 8244868 8246675 Seca4g00505 4 8244868 8246675 PCT