Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00491 ATGGCTGGGTTGTTCTCTCTAGGTGGAAGGGGAGGCCCACAAAACAAGGTAGGAGAAGTAGGAAAAGAAGAAAACAATAACAGTAGTAGCCTATTGTTGTTCAGGAACGAGGAGATCTACAACAACAAGGGGCTGGAGATATGGCCACAGCCCTATCAGGCACAACACCAAAACTACTATGCGTTTGGGGTGGGTCCTAGTCGCATCAACGTGAGCGAGGACGACGTCGTCTCTTCCTCCTCCTTGTGTGTATCTGATGAGTCTATGAGATTTGGATTAACTGTCATGAGGCCTGGAAGTGGCGGCATCAACTGTCAGGACTGTGGCAACCAAGCTAAGAAAGACTGTTCACATCTTAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCTGCTGCCAAACGCCGCGAACGACAACAACAACAACTCGCTGCGTTGCAGCAGCAGCAGCAACAGTTGCGGGGAGAGAATCCTAAACGACATCAAGCTGCAGGCACCTCTCTTGCCTGCACTCCACCACCCATCACTACTATTTCCACAGGGTTAGAGTTGGGGCAATTCCCACCTGAAGTGAGCTCTTCAGCGGTGTTTCGGTGTGTAAAGGTTAGTGCAGTGGACGCTACAAATGAGCAATGCGCGTATCAAACCACTGTCCACATTGGTGGCCATGTTTTCAAAGGAATTCTATATGATCAAGGTCCAGAAAGTTCTTATACCAATACAGCTGTTGAGGGTTCCTCCAGTGGAGGTGAAGCTCATCAACAACTTGGTTTCATAACCGCTGCAACTGCAACCACAGCCACAGGTAGTGGCAATCCATTTGACCCTTCACTTTACCCCGCTTCTCTGAATGCTTTTATGGCTGGTACGCAATTTTTCCCACCCCCAAGATCCTAA 930 0.4946 MAGLFSLGGRGGPQNKVGEVGKEENNNSSSLLLFRNEEIYNNKGLEIWPQPYQAQHQNYYAFGVGPSRINVSEDDVVSSSSLCVSDESMRFGLTVMRPGSGGINCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQQLAALQQQQQQLRGENPKRHQAAGTSLACTPPPITTISTGLELGQFPPEVSSSAVFRCVKVSAVDATNEQCAYQTTVHIGGHVFKGILYDQGPESSYTNTAVEGSSSGGEAHQQLGFITAATATTATGSGNPFDPSLYPASLNAFMAGTQFFPPPRS. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00491 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 295 IPR007818 GO:0003700|GO:0006355
Seca4g00491 309 NCBIfam LRP1 C-terminal domain 197 245 IPR006511 -
Seca4g00491 309 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Seca4g00491 309 Pfam Domain of unknown function (DUF702) 102 246 - -
Seca4g00491 309 Coils Coil 147 167 - -
Seca4g00491 309 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00491 Seca-Chr4 8008152 8009898 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca4g00491 DUF702 6e-63 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00491 4 8008152 8009898 Seca12g02813 12 50661175 50664320 ECH
Seca4g00491 4 8008152 8009898 Seca4g00156 4 2387953 2388903 ECH
Seca4g00491 4 8008152 8009898 Seca6g00861 6 29431715 29433386 ECH
Seca4g00491 4 8008152 8009898 Seca4g00491 4 8008152 8009898 ECH
Seca4g00491 4 8008152 8009898 Seca4g00491 4 8008152 8009898 PCT