Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00156 ATGGAATTAGGAGAAGAAGAAGTGGTAAAGGGTTCAAAGTGCCAAGACTGTGGGAACCAAGCGAAGAGGGAATGTTCATACTCAAGGTGCAGAACTTGCTGCAAGAACAAAGGTTTTGAGTGTCAAACTCATATCAAGAGCACTTGGATTCCTGTCGATAAGAGGCGCCAGATTATCAGAGATCACCAGGAACAAGTACAACAACCTAATCCACACCACTTTCTCACAAATACCCCTAAAAACCACAACCACAACCCATATTCAGGAATGAATAATTGTGCAGGTGGTTTAGAGGAGTTAAAATTTCCAGCTGCTATGAATTCAATGGCTATATTTCGATGTGTTGAGGTTCGTTCTATGGATGATACGGTGAATGAAATAGCGTATCAAACATGTGTGAACATTGGAGGACATGTATTTAGTGGAATTCTTTATGATCAAGGCCCTGATCATCAGACCTTCAATGCAAGGCCAGGTGGTGACAGTTCCACAACCACTGGACTTATTGATCAGCAGAGTCTGAGTCTTATGAATAATGCTTCAATCCACAGTACTCGAGATGGTGCAACTATGGTTATGGCTCCATTATCAGCTCATCATGATCACCATTTTCTACCTTCACCACCCTTTCCTTTTCCCTTTGCTCCCAGCAGACCTGGTATGCCATATTTCTCACATCCAAAGTCTTAG 690 0.4232 MELGEEEVVKGSKCQDCGNQAKRECSYSRCRTCCKNKGFECQTHIKSTWIPVDKRRQIIRDHQEQVQQPNPHHFLTNTPKNHNHNPYSGMNNCAGGLEELKFPAAMNSMAIFRCVEVRSMDDTVNEIAYQTCVNIGGHVFSGILYDQGPDHQTFNARPGGDSSTTTGLIDQQSLSLMNNASIHSTRDGATMVMAPLSAHHDHHFLPSPPFPFPFAPSRPGMPYFSHPKS. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00156 229 NCBIfam LRP1 C-terminal domain 101 149 IPR006511 -
Seca4g00156 229 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 7 190 IPR007818 GO:0003700|GO:0006355
Seca4g00156 229 Pfam Domain of unknown function (DUF702) 11 150 - -
Seca4g00156 229 NCBIfam putative zinc finger domain, LRP1 type 13 55 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00156 Seca-Chr4 2387953 2388903 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca4g00156 DUF702 2.4e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00156 4 2387953 2388903 Seca4g00156 4 2387953 2388903 ECH
Seca4g00156 4 2387953 2388903 Seca6g00861 6 29431715 29433386 ECH
Seca4g00491 4 8008152 8009898 Seca4g00156 4 2387953 2388903 ECH
Seca6g00861 6 29431715 29433386 Seca4g00156 4 2387953 2388903 ECH
Seca4g00156 4 2387953 2388903 Seca12g02813 12 50661175 50664320 ECH