Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11874 ATGTTTGTTACCAACCAAAACTCACTCTGCTTCCTTAATGGACTTGGCGAAGTTAAGGTGCGAGGGAAAATTGAAAATAGTACCACTACCAAATCTACAAATGATTCAGCCCCACAGATTGGGATCCCTGATGACAGAGACAAACTGCTTGATGGACTGTTAGCTTCTGGATTCGATGAAGCATCATGCATAAGCAGGCTGCAATCCTACTTATACCGCAAAGCAGCTTCTCCTCACAAAGCTTCTCCATATTTGATATCTAAACTACGCAACTATGAAGAAATTCACACAAGGTGTGGACCAAATAGTAGAGCTTTCAACAGAAACATGATAAGGATTGTGCGTTCTAAGAACAATGGTAATGGTGTTGCTGCTGCAATGTGTAAATACCTTGTCTGGACTCCTGTCAATGGTTTGGGAAACCAAATGATTAGCATTGCTGCAACATTTCTTTATGCAATCCTCACAGACCGAGTTTTGCTTGTCAAATTTGGGAAAGACAAGCATGGCCTATTTTGTGAGCCATTTCTCAATTCAACTTGGCTATTGCCTGACAAGTCTCCTTTTTGGAATGAAAATCATGTCCAAACATATCAGAGCATTTTAGAGAAGGACAGAGTTAGGGCTAACACTTCAAAGGAGGATAAGGGTTTACCATCAGCACTATTTCTTAATCTACAACATACCCTCAGTGATCCAGAGAAATTATTTCACTGTGATCATAGTCAAGATCTTCTCCGGAAGGTTCCTTTGTTGATTTTGCAGTCTGATCAGTATTTTGTCCCTTCTCTGTTCATGACCCCATCTTTCAACTTGGAAATTAACAAAATGTTCCCAGAAAAAGACACAGTCTTTCACCATTTGGGGCGTTATCTATTTCACCCTTCAAACGAGGCATGGGGACTAATCAGCAGATTCTATAAGACACACTTGGCCAAAGCAGATGAGAGGATAGGCCTTCAGATAAGAGTGTTCAACCCTGTTTCAACTCCAAAACAAACAGTTATGAATCTGGTTTTGAGCTGCACATTAAAACATAAGTTACTGCCAGAAGTAGATATGCAAAATTCAGTGTCTTCTACTGGCAAAAACCAGATTGTGAAGGCTGTTCTTGTGGCATCTTTATATCCAGCGTATGGAGAGAATTTACGGGCTATGTATCTGAGAAAAGCAACAGTTAGTGGGGAAGTAATAGAGGTTTATCAGGCAAGTCATGAAGAGCGTCAAAAGTATAATGATAATATGCATAATATGAAGGCATGGACGGACATGTATCTTCTGAGTTTATCTGATGTGTTGGTGACTACCTCTCTTTCAACATTTGGGTATGTTGCTCAGGGTTTGGGGAATTTGAGGCCATGGCTTCTTTACAAGCTGACCAATAATGAGACCCATTTTCCAGCATGTGAACGGGACTTGTCATTGGAGCCTTGTTATCACGCTCCTCCCAAGCACTACTGCAATGGAAAGCCCATCCAAGATTTTGCTTCTTCTTTCCCTTATATGAGGAAATGCAAAGATTATTATTTTGGCGTGAAGCTGGTCAATGGTTCCATGTAG 1560 0.4071 MFVTNQNSLCFLNGLGEVKVRGKIENSTTTKSTNDSAPQIGIPDDRDKLLDGLLASGFDEASCISRLQSYLYRKAASPHKASPYLISKLRNYEEIHTRCGPNSRAFNRNMIRIVRSKNNGNGVAAAMCKYLVWTPVNGLGNQMISIAATFLYAILTDRVLLVKFGKDKHGLFCEPFLNSTWLLPDKSPFWNENHVQTYQSILEKDRVRANTSKEDKGLPSALFLNLQHTLSDPEKLFHCDHSQDLLRKVPLLILQSDQYFVPSLFMTPSFNLEINKMFPEKDTVFHHLGRYLFHPSNEAWGLISRFYKTHLAKADERIGLQIRVFNPVSTPKQTVMNLVLSCTLKHKLLPEVDMQNSVSSTGKNQIVKAVLVASLYPAYGENLRAMYLRKATVSGEVIEVYQASHEERQKYNDNMHNMKAWTDMYLLSLSDVLVTTSLSTFGYVAQGLGNLRPWLLYKLTNNETHFPACERDLSLEPCYHAPPKHYCNGKPIQDFASSFPYMRKCKDYYFGVKLVNGSM. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11874 519 PANTHER FUCOSYLTRANSFERASE 2-RELATED 32 516 IPR004938 GO:0008107|GO:0016020|GO:0042546
Seca3g11874 519 Gene3D - 302 465 - -
Seca3g11874 519 Pfam Xyloglucan fucosyltransferase 26 487 IPR004938 GO:0008107|GO:0016020|GO:0042546
Seca3g11874 519 FunFam Galactoside 2-alpha-L-fucosyltransferase 126 177 - -
Seca3g11874 519 Gene3D - 126 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11874 Seca-Chr3 267227601 267229160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11874 47 515 Xyloglucan Fucosyltransferase1 AT2G03220 50.107 1.41e-162 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11874 K13681 - gmx:100809919 772.311