Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11274 ATGGAGGGGATAGGTCCCAATTCATGTGCAAGGCCAGTTTTAGAGAAGAAAACAAGGCCACAAGAGCAACTGAACTGTCCAAGGTGCAATTCAACCAACACCAAATTCTGTTATTACAACAACTACAGCCTCACACAACCAAGATACTTCTGCAAGACTTGTAGAAGGTACTGGACAGAAGGTGGCTCTCTGAGAAATGTCCCAGTTGGAGGTGGTTCTAGAAAGAACAAGAAGGTCACCTCTGCCACAGCAGCTTCATCAAAGGTTCCAGACCTAAACCCACCAACCCTTTCATCACCTGTTTCTTCTCATCAAAACCCTAAAATGCATGGAGGCCAAGATCTTAATCTGGCTTTCCCAGCCATGGATAAGTATCATAGCAGCATGTCAAACCCTTATGTTGAGATGCACAATGGTGATACCAGTCACCAGAGCTCTTCTTCTGTTCCAACTTCTCTGTCTGCTCTGGAGCTATTAAGGTCTAGCATGGCATCTAGGGGCTTGAACCCTTATGCTCCTAATAATTCTTCCTTGATGGCAAACACTAATGGCCTTTACCCATCTGGCTTTCCCATGCAAGAAGTTAAACCAAGTATTGGCTTTTCAGTTGATGGGATTGGAAACAGATCATATGATCAGGTCCAAGAGAGTGGTGGTGGCAGGCTTTTGTTCCCTTTTGGAGATGTCAAGCAGCTTTCTGCAGGTAGTGCTGAAGTGGAACACAATAAAGAACAAGGAAATTCAGCTGGATATTGGACTGGAATGATTGGTGAAGGGTCATGGTAA 786 0.4466 MEGIGPNSCARPVLEKKTRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSATAASSKVPDLNPPTLSSPVSSHQNPKMHGGQDLNLAFPAMDKYHSSMSNPYVEMHNGDTSHQSSSSVPTSLSALELLRSSMASRGLNPYAPNNSSLMANTNGLYPSGFPMQEVKPSIGFSVDGIGNRSYDQVQESGGGRLLFPFGDVKQLSAGSAEVEHNKEQGNSAGYWTGMIGEGSW. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11274 261 MobiDBLite consensus disorder prediction 76 110 - -
Seca3g11274 261 MobiDBLite consensus disorder prediction 65 111 - -
Seca3g11274 261 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Seca3g11274 261 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Seca3g11274 261 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g11274 261 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Seca3g11274 261 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 154 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11274 Seca-Chr3 260437659 260438444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11274 16 261 C2C2-Dof Transcription Factor Family AT3G61850 49.091 3.50e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g11274 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11274 - - gmx:778110 404.445