Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10384 ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAACAACAGCAACCAAATCATCACCAACAAGGAAACACAGGTTCCACTTCTCAGCAGCTGCTTCCACCACCACCACCACCACCTCCACCGCCACCGCAGCCTCATGGAACCGCCGGCTCCATCAGGCCAGGATCAATGGCAGATAGGGCAAGGATGGCAAACTTACCTATGCCAGAAACTGCACTGAAATGTCCACGCTGTGAATCAACCAACACAAAATTCTGCTATTTCAACAACTACAGCCTCTCTCAGCCACGCCACTTCTGCAAGACCTGCAGAAGGTACTGGACAAGAGGCGGCGCTCTCAGAAACGTCCCCGTCGGCGGTGGTTGCCGGAGGAACAAGAGAAGCAAAGGAGGAAGCAGCAACAGCACAAAATCACCAGCAAGCTCAGACAGGCAAACAGGAAGTGCTAGTTCAACTAACTCAGTTTCTTCTAACAGTGGTTCTGCTGATATAATTGGCCTTAATCCTCAGATGCCACCACTTAGGTTCATGGCTCCTTTGCATCAACTCACTGATTTTGGAGATATGGGATTAAACTATGGCCTCAGTTATAACCCAATGGGAGGAGTAGGAGATATGAGTTTTCATATTGGAAGTGCTTTAGGTGGTGGAAATAATGTTAATGTTAATGTTGGTGCTGGTGTTGGTGGTTCTATTTTATCTGGTGCTGGTTTGGAACAATGGAGAATGCCACAGACACAACAGTTTCCATTTTTGGGTGGTTTGGAAGGTTCAGCTGGTGGTTTGTACCCTTTTGATCAAAGTGGTGCTCATGAGGTAACTGGATATGGTGTTGGAGGTGGGGTGAGTCATGTGAGGCCAAAGGGTAATTCTTGTTCTTCTACTTCTGGGGTGATAACTCAACTTGCTGCAGTGAAAATGGAAGATAGTGTTAGGGAGCTTAATTTGTCAAGCCAGTTCTTGGGAAGCAATAATAATAATATTAATATTCCAGCAAGTGAACAATATTGGAGTACTAGTGGTGGTACTAATTCTGCAGCTTGGACTGATATTTCTGGTTTTAGCTCCTCTTCTACTACTAGTAACCACATGTAG 1110 0.4577 MVFTSIPAAYLDAANWQQQQPNHHQQGNTGSTSQQLLPPPPPPPPPPPQPHGTAGSIRPGSMADRARMANLPMPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGSSNSTKSPASSDRQTGSASSTNSVSSNSGSADIIGLNPQMPPLRFMAPLHQLTDFGDMGLNYGLSYNPMGGVGDMSFHIGSALGGGNNVNVNVGAGVGGSILSGAGLEQWRMPQTQQFPFLGGLEGSAGGLYPFDQSGAHEVTGYGVGGGVSHVRPKGNSCSSTSGVITQLAAVKMEDSVRELNLSSQFLGSNNNNINIPASEQYWSTSGGTNSAAWTDISGFSSSSTTSNHM. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10384 369 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Seca3g10384 369 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Seca3g10384 369 MobiDBLite consensus disorder prediction 119 169 - -
Seca3g10384 369 MobiDBLite consensus disorder prediction 132 169 - -
Seca3g10384 369 SUPERFAMILY Formin homology 2 domain (FH2 domain) 38 356 - -
Seca3g10384 369 MobiDBLite consensus disorder prediction 17 34 - -
Seca3g10384 369 MobiDBLite consensus disorder prediction 35 53 - -
Seca3g10384 369 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 174 IPR045174 GO:0003700|GO:0006355
Seca3g10384 369 MobiDBLite consensus disorder prediction 17 60 - -
Seca3g10384 369 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10384 Seca-Chr3 248634388 248636195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10384 1 335 C2C2-Dof Transcription Factor Family AT5G02460 39.750 2.12e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g10384 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10384 - - pvu:PHAVU_010G013500g 409.068