Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09528 ATGTTCCATGTTAGGGATCCTTCAATCAAGCTTTTTGGTACAGATATCCACATTCATATTCCCATTACCGCAGATTCACACTCTCTCACTCAGATTCAGCCACCCATCATCATGAACGGATTTGAAGAATCAACTAGTGCTGAAGTGGATGTTCCTTGGAAGGAAGTATCTGGCAAACAGACTGATCCTCAAGAAGATGCTAATGGTATTGCAAACATGTATAAAAACCCTACTCTTAAACTGGTAGCCAAAGTAGTTCATAGAACAAATGAACATAGGTCTGCTAAAAGAGAAATTGATCATGAAGAAAAAGTTCTTAAGAAGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTATTTCAATAATTACAATGTTAACCAACCTAGGCATTTCTGCAAAAATTGCCAGAGATATTGGACTGCTGGGGGGACAATTAGAAATGTTCCTGTTGGAGCTGGTAAGCGCAAAAATAAGCACTCAGCTTTGCAGTATTGTCAGGTTCCTGTGACATCTGATGCAGCATCTGTCATCCAGACAGATTCCAACCCTGCTAGTGATAAGCATTTTTCATCTAGCATACTTCCTGTGACTCCAAGACCTGTTATTGAAATAGGGAACATCCTAAGTCTCAGAGAGGAAGCTCCTCTTAGTACATCCCTTGAAACTATGTTAAATCTCAAGGGCCAGACAAAAATTGAAGTGGACCCTTCTACTGTCAAAGATGATGGTGAGGAGCCTTCCAGCTCTTCTATGAGAAATGTTGAATCCAAGGAGAAGGAATGTTCAGAAAATATGATAGAGCAGGTTGGTTTGACACAACACTTTAATGGTTTAATTCCTTTACATTCACTTCATTGTTATCCTGTTCCTCCATGGGCTTACCAATGGAATCCATGTTGGAATGCTATAGCTTTTAGGCCTGGTAGCATCACTTCCAGTCCTGCTTACATGGGTTCTGCAACCATGATGGCAGTTCCTGGCTTCTCCACACCAACAGTAGAATTGCCATTGGCACCTTCTTCATTTTGGGGTTGCATGCCAAGCTGGGCTGGAGAAAAGGATGAGTCTTCATTGGTTGGATCTACATTTAGTTGCATCTCATCATCACCTTCATCTTCAGTTAGCAACAGTACCTTTTCTGGTAATAGGTCTCCAACCTTAGGAAAACATTCTAGAGATGGAAGTACACCAGGTGAAGATGCAATGCAACCAAATCTTTGGGTACCTAAGACTGTAAGAATTAATGATCCAGAAGAGGCTGCAAAGAGTTTTATATGGTCAACATTGGAAACAAAATCTGAACAGAACAAACCCATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAATGCCAGTTCACATACTTTAGATGATAATCAAATTCTAAGGGCAAACCCTGCTGCTTTCTCCCGCTCTGAATCCTTTCAAGAAAGCATTTGA 1473 0.406 MFHVRDPSIKLFGTDIHIHIPITADSHSLTQIQPPIIMNGFEESTSAEVDVPWKEVSGKQTDPQEDANGIANMYKNPTLKLVAKVVHRTNEHRSAKREIDHEEKVLKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKHSALQYCQVPVTSDAASVIQTDSNPASDKHFSSSILPVTPRPVIEIGNILSLREEAPLSTSLETMLNLKGQTKIEVDPSTVKDDGEEPSSSSMRNVESKEKECSENMIEQVGLTQHFNGLIPLHSLHCYPVPPWAYQWNPCWNAIAFRPGSITSSPAYMGSATMMAVPGFSTPTVELPLAPSSFWGCMPSWAGEKDESSLVGSTFSCISSSPSSSVSNSTFSGNRSPTLGKHSRDGSTPGEDAMQPNLWVPKTVRINDPEEAAKSFIWSTLETKSEQNKPIMKGSVFKSFEPKSNASSHTLDDNQILRANPAAFSRSESFQESI. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09528 490 MobiDBLite consensus disorder prediction 241 264 - -
Seca3g09528 490 PANTHER CYCLIC DOF FACTOR 2 5 489 IPR045174 GO:0003700|GO:0006355
Seca3g09528 490 ProSitePatterns Zinc finger Dof-type signature. 115 151 IPR003851 GO:0003677|GO:0006355
Seca3g09528 490 MobiDBLite consensus disorder prediction 376 399 - -
Seca3g09528 490 Pfam Dof domain, zinc finger 110 167 IPR003851 GO:0003677|GO:0006355
Seca3g09528 490 ProSiteProfiles Zinc finger Dof-type profile. 113 167 IPR003851 GO:0003677|GO:0006355
Seca3g09528 490 MobiDBLite consensus disorder prediction 242 264 - -
Seca3g09528 490 MobiDBLite consensus disorder prediction 376 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09528 Seca-Chr3 236119119 236122594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09528 6 489 C2C2-Dof Transcription Factor Family AT5G39660 34.982 2.47e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g09528 zf-Dof 5.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09528 - - gmx:102666857 629.017