Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08956 ATGGATCCTTCTAGTGGACAACCCCAGCAGCAAATGTCTAGCCAATCCTTGGAGAACATGTTAGGTTGCTCAAAAGCACAGCAAGAGAGGAAGCCAAGACCTCAGCCAGAACAAGCTCTGAAATGTCCAAGATGTGACTCCACCAACACAAAATTCTGTTACTACAACAACTACAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACAAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCAGGAAGAACAAGAGGTCATCATCTTCATCATCAAAGAGGGCTCAGGATCAAACATTCCCACCCAGTCCCAACCCACTCACAAGCCTCCCTCATTCTTCCTATGACTCCAATGACTTCAACCTAGCATTAGCTAGGCTCCAAAAACAATCATGTGGACAATTGGGATATGCTGACCATGATCTTTCAATTTTGGGGAATCCCACAAGCTCCTTTAATGACATTCTTGGCAATTCAGGCATGAACCATATGTCAACAAACCCTGGATTCTTGGATGCACTTAGAAGTGGGTTCCTTGGGAGTGGAACACAGTATAACAATAATCATCTTCAGAACATGTACTCTGTGTATGGAAATGGGGACACTGGAGAGGTGGATAGTGGAAGTTCTTGTGGGGTTGGGATTAGTGGAGATCAGATGATGATTCCTAATTATGATCAAGAAATGAGCAATGCAGCCACTCAAGCAGTGGCTGTCACTACCATGAAACAAGAAGTGTGCAGTGGCAGGGAACAAAGTGAAAGCAAGGTGTTTGGGGGTTTCCCTTGGCAATTCAATGGAGGCTCAAACATGGGTGAAATTGATTCAGGAAGAGCAAGTTGGAATGGTTTCACTTCTCCTTGGCATGGGCTTCTACATAGTCCCCTGATGTAG 918 0.4499 MDPSSGQPQQQMSSQSLENMLGCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRAQDQTFPPSPNPLTSLPHSSYDSNDFNLALARLQKQSCGQLGYADHDLSILGNPTSSFNDILGNSGMNHMSTNPGFLDALRSGFLGSGTQYNNNHLQNMYSVYGNGDTGEVDSGSSCGVGISGDQMMIPNYDQEMSNAATQAVAVTTMKQEVCSGREQSESKVFGGFPWQFNGGSNMGEIDSGRASWNGFTSPWHGLLHSPLM. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08956 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 196 IPR045174 GO:0003700|GO:0006355
Seca3g08956 305 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Seca3g08956 305 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Seca3g08956 305 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Seca3g08956 305 MobiDBLite consensus disorder prediction 91 120 - -
Seca3g08956 305 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g08956 305 MobiDBLite consensus disorder prediction 1 41 - -
Seca3g08956 305 MobiDBLite consensus disorder prediction 84 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08956 Seca-Chr3 226658478 226660405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08956 8 305 C2C2-Dof Transcription Factor Family AT2G28510 39.818 1.21e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g08956 zf-Dof 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08956 - - gmx:100799737 421.394