Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03238 ATGCAGGAAATACATTCCATCGGCGGCGGAGATAGGAGGCTGAGGCCACACCACCACAACCAGCAACTTCAGCCGTTGAAGTGTCCCCGATGTGACTCCTCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAAAACTGCCGCAGGTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCTGTCGGCGGCGGTTGCCGGAAATCAAAGCGCTCCAACAAGCCTAACAACAACACTACAACCTCATCCTCCACTGCTCCGGCAACCACACCAACACCGCAACCACAACCACCGCCAGAGCACAAATCGAACTCTCACTCCGGCAGCGAGAGCTCCACCCTCACCGCCGTCGCTGCCACGGAGGCGATGTCGGCGCCGACATCAAACCCTCCGTTGGAGAACATTCGCGAGACCAAGGTGTTCGCAAACCCTTCTTTGGAGCTGGAACAGGGAGGTGGTGGCGTATTACGGAGCTTCACGAGCCTCGTCACTTCAACCAGCAACGCATTGCCGTTTGTGTTTGGGAATAATAACTTCCTCGATGCGTCGTCGTTTCGGTTCGGCACTAATCATCAGCAGGGGAACGATCAGGTACACGTGGCACCAGGTGGTGGCCCGCATGGTGAGTGCCAGTGGCAACAGCAGAGGGTGATTGGCTTGAGCGGTGATCATCACCATCAGGAGTTTGAGGAGGCGTCGCTGCTGCATCACACGGTGCCTGTTGAGTTTTCTTCGCTGCAAAATAAAACTGATCAGCATGGTGGAGGATTTGGATCGTTGGATTGGAATGCCGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCCTTGATCAGCCTTATTGGACCCACACTCACTGGTCTGATCAAGACAATTCTACTCTCTTTCATCTTCCCTGA 927 0.5458 MQEIHSIGGGDRRLRPHHHNQQLQPLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPNNNTTTSSSTAPATTPTPQPQPPPEHKSNSHSGSESSTLTAVAATEAMSAPTSNPPLENIRETKVFANPSLELEQGGGGVLRSFTSLVTSTSNALPFVFGNNNFLDASSFRFGTNHQQGNDQVHVAPGGGPHGECQWQQQRVIGLSGDHHHQEFEEASLLHHTVPVEFSSLQNKTDQHGGGFGSLDWNAGADQGLFDLPNTLDQPYWTHTHWSDQDNSTLFHLP. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03238 308 Pfam Dof domain, zinc finger 25 80 IPR003851 GO:0003677|GO:0006355
Seca3g03238 308 MobiDBLite consensus disorder prediction 79 98 - -
Seca3g03238 308 MobiDBLite consensus disorder prediction 1 27 - -
Seca3g03238 308 MobiDBLite consensus disorder prediction 70 123 - -
Seca3g03238 308 MobiDBLite consensus disorder prediction 1 18 - -
Seca3g03238 308 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Seca3g03238 308 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Seca3g03238 308 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 205 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03238 Seca-Chr3 58333077 58334003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03238 11 305 C2C2-Dof Transcription Factor Family AT5G60850 41.587 1.38e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g03238 zf-Dof 3.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03238 - - gmx:778116 363.999