Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02923 ATGCTACTCTTCTCTTCTCCTTCATTTCTCACATTCCTCTTCCTCCATCTAACAATTCCTACTCCTAGAAGCAATGCCATTCATAAACTGCTACTAGTAGCAGTGGCCGGCACTTCAGTTTCACAAAGTACACTGCTAATTAAGAGAAGAACAAGGAATCCTCATCATCAGATCGTGGTTCAGTTCACTAGTGTATTTTTGCTTCTGAATGGGTTTATCTTCTCTGCATGTCTGCATGGAATCATCAGATCATTGGTTGCAGGTGTTAGTGTCTTGAAATTCTACAATGCCTCTCTGTTTAGTGTTGGACAGGAAGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCTTCACCATCTGGGGACATGCTCACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGTCCAAGGTGTGATTCAACCCACACCAAGTTCTGCTACTACAACAATTATAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTACTGGACTAAAGGAGGGACTCTTAGGAACATCCCTGTTGGTGGAGGTTGCAGAAAGAACAAGAAAGTTTCAGCCAAGAAATCCAATGAACATTTACCTAATAATCAAAACCAACCACAACCTGGAGGAGGACCTTCCTACCATCATCACAACCCCAAAGATCTTCAACTCTCTTTCCCAGATGTGCAATTTTCTCACCTCAGTAACTTTCTTGGGACTAATGCTGGAGCATTAGGAAACCCTAATTTCATGGACAACAAGTATAATAACAACAACATTGGTATGCTTGAGAACCCTAGGCCTATTGACTTCATGGAGAGTAAGTTGGAAGGCATAATTGGGAGTAGTTCTAGGAATTTTGATTTTTTTGGAAATAGTAGTGATCATATGGGTATGGCTGTTGGGTTGGGAGATATGAATGGTCAAAATGGATTACCACCAAATTTTCACAATCTTTGTTCCCCTGCATTTGGTGCCATGTCCTTTGATGGTGGAAACAATAATGGAGGTTACTTAATGGATTCTTGCCAGAGACTGATGCTGCCATATGATCATGCCAATGAGGATCACAATGCCTCAATTGATGTGAAGCCAAACCCTAAACTATTGTCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCAGGAAAAGAGTCATTTGGATATCTTAACGGTCCAGGATCATGGAATGGCATGATGAACGGCTATGGATCTTCCACAACAAACCCTTTGGTCTAA 1263 0.4252 MLLFSSPSFLTFLFLHLTIPTPRSNAIHKLLLVAVAGTSVSQSTLLIKRRTRNPHHQIVVQFTSVFLLLNGFIFSACLHGIIRSLVAGVSVLKFYNASLFSVGQEGTIHEESGMDSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNEHLPNNQNQPQPGGGPSYHHHNPKDLQLSFPDVQFSHLSNFLGTNAGALGNPNFMDNKYNNNNIGMLENPRPIDFMESKLEGIIGSSSRNFDFFGNSSDHMGMAVGLGDMNGQNGLPPNFHNLCSPAFGAMSFDGGNNNGGYLMDSCQRLMLPYDHANEDHNASIDVKPNPKLLSLEWQDQGCSDAGKESFGYLNGPGSWNGMMNGYGSSTTNPLV. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02923 420 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Seca3g02923 420 Pfam Dof domain, zinc finger 140 197 IPR003851 GO:0003677|GO:0006355
Seca3g02923 420 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
Seca3g02923 420 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 131 280 IPR045174 GO:0003700|GO:0006355
Seca3g02923 420 MobiDBLite consensus disorder prediction 188 230 - -
Seca3g02923 420 MobiDBLite consensus disorder prediction 204 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02923 Seca-Chr3 52185281 52187129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02923 133 420 C2C2-Dof Transcription Factor Family AT5G62940 42.901 1.04e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g02923 zf-Dof 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02923 - - gmx:778107 494.582