Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02390 ATGTTCCCACAAACACAAAGACATAGTGCTAGTTGTAACGGCCTAGAGCAGATCATGTTTCATCATCAGCTCCAATCTTCTTCTCCTATGCCAGTTCCAACCACAATGGATAGATCAAGTTCTTCAAGGTGGAAGCCGAGCATTGAGGTAGCTCCAAATTGCCCTCGTTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCCTGTCACAGCCGAGATACTTCTGCAAAGGCTGCAGGCGCTACTGGACCAAAGGTGGCTCTCTTCGGAACGTCCCTGTTGGTGGTGGCTGCCGCAAAAGCCGCCGCGGAAAATCGGCAAAGCACCCCAAAACTGAAGGTAGCTTCCATGGGAGTGATGATAGAGAGTCATCAATAGGTGATCAACACAACCAAACCAATGGCCATGTGTCTTGTGATATAGACATGGCTCTTGTGTTTGCCAAATTCTTGAACCAAGAGAAGAGTAATATTGGTGGTGAGGATCAATTTGAGAGTGAGGCTACAAACAATGGGTCAACTTCTTCCAATGATGCAGTGATCAATTTGAAGAAGTCCTCTGATGAAGCAGTGGGAGACACACTGGAAGAATTGAGTTTGAGTGGGATTGATGAGCTGGAGGGATATCTTGGTGGTTGTGATGATGAAGATGTGGTCCAAGATGTTCTCTGGCCTCATGATGCTACCATGTCCATGTCTTCTTCTATTATGTGGCAAACACCATCCATGATGCAAACGCAGTTGGATCAGTTGGAGTACTCGTTGCCATTCAATGAGGATGGTGATCAATTCTTACCGATTAGTTCAACTTCTTCTACTGTGAATTTAATAAGCGACAGTTGGAGTTCCTTTGATTTTTCAACCATGGAGGTCTTCTCATCAAGACCCTAA 900 0.4533 MFPQTQRHSASCNGLEQIMFHHQLQSSSPMPVPTTMDRSSSSRWKPSIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRGKSAKHPKTEGSFHGSDDRESSIGDQHNQTNGHVSCDIDMALVFAKFLNQEKSNIGGEDQFESEATNNGSTSSNDAVINLKKSSDEAVGDTLEELSLSGIDELEGYLGGCDDEDVVQDVLWPHDATMSMSSSIMWQTPSMMQTQLDQLEYSLPFNEDGDQFLPISSTSSTVNLISDSWSSFDFSTMEVFSSRP. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02390 299 MobiDBLite consensus disorder prediction 96 136 - -
Seca3g02390 299 Pfam Dof domain, zinc finger 52 106 IPR003851 GO:0003677|GO:0006355
Seca3g02390 299 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Seca3g02390 299 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Seca3g02390 299 MobiDBLite consensus disorder prediction 111 130 - -
Seca3g02390 299 MobiDBLite consensus disorder prediction 25 45 - -
Seca3g02390 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 183 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02390 Seca-Chr3 42488829 42489728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02390 39 157 C2C2-Dof Transcription Factor Family AT3G52440 58.537 2.36e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g02390 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02390 - - mtr:11416134 274.633