Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02201 ATGCAGAGCACTCTGTTTCTCCTTTTGCTTCTTCAGGCTTTGATCACTGCGAGCTGTAAATCCACCATTGAGCCATGCACAAACTCAGACTCTTGCAATGCTCTGTTAGGTTACACGCTTTACACGGACCTTAAGGTCTCTGAGGTAGCTTCCCTCTTCCAAATCGACCCTATCGCTCTTCTCACTGCCAATGCCATTGATATTTCCTACCCTGACGTGGAACACCACATCCTTCCTTCGAAGCTTTACCTCAAAATCCCCATCTCATGTTCCTGCGTTGATGGGATTCGCAAATCGGTGTCTACCAATTACAAGACGCGTCCTTCAGACACTCTTTCTTCCATTGCTGATTCCATCTATGGGGGTTTGGTCTCTGCTGATCAACTCAGAGAGGCCAATTCCATAACTGACCCTTCAGTGCTTGATGTGGGGCAGAACCTTGTGGTGCCTCTTCCTTGCACTTGCTTCAATGGTTCTGATAACTCTTTGCCAGCAATTTACCTCTCCTATGTGGTTCAGCCACTTGATAGTTTGGCTTCAATTGCCGCTAGGTATTTCACTACTCTTACTGATTTGATGAATGTTAATGCCATGGGGAGCACAGCTATCACTGATGGTGATATCCTTGCCATTCCAATTCCAGCTTGTGCTTCAAATTTTCCAAAATATGCTTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGTTATGCCATTACAGCAGGCCACTGTGTACAGTGTAGCTGTGGACCACGAAACCTAAATTTGTACTGTATGCCAGCTTCTCTAGCTGTTTCTTGTTCTAGCATGCAATGTAAAAACAGCAATCTCATGCTAGGGAATGTTACAGTGCAACAGAGTAGTGCTGGTTGCAATGTTACTTCTTGCAGTTATGATGGTATTGTTAATGGCACCATAGCAACAATGTTGTCCGCATCCCTTCAGCCTAGATGTCCAGGTCAGTATGCTGCAGCCATACACACATGTAGAGAGAGCATGCAAAAGCATTGCAGAATGGCATTCTTGACTTTAAATAAATTATTGCTTTTTATTTTGCCTTACATTCTGGATGATTTATCTACTGAGATGTTAGTTGACCTGGTTCACATTATGTGGGAAGATTCAGTACTACTAGGTCTTCTATTTAGAATTTTAGATACTTGA 1161 0.4332 MQSTLFLLLLLQALITASCKSTIEPCTNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLYLKIPISCSCVDGIRKSVSTNYKTRPSDTLSSIADSIYGGLVSADQLREANSITDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVQPLDSLASIAARYFTTLTDLMNVNAMGSTAITDGDILAIPIPACASNFPKYASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTVQQSSAGCNVTSCSYDGIVNGTIATMLSASLQPRCPGQYAAAIHTCRESMQKHCRMAFLTLNKLLLFILPYILDDLSTEMLVDLVHIMWEDSVLLGLLFRILDT. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02201 386 Gene3D LysM domain 96 156 IPR036779 -
Seca3g02201 386 SMART LysM_2 169 212 IPR018392 -
Seca3g02201 386 SMART LysM_2 103 150 IPR018392 -
Seca3g02201 386 SUPERFAMILY LysM domain 168 213 IPR036779 -
Seca3g02201 386 ProSiteProfiles LysM domain profile. 168 211 IPR018392 -
Seca3g02201 386 Pfam LysM domain 170 212 IPR018392 -
Seca3g02201 386 Pfam LysM domain 104 150 IPR018392 -
Seca3g02201 386 SUPERFAMILY LysM domain 103 151 IPR036779 -
Seca3g02201 386 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 4 320 - -
Seca3g02201 386 CDD LysM 104 149 IPR018392 -
Seca3g02201 386 Gene3D LysM domain 157 220 IPR036779 -
Seca3g02201 386 CDD LysM 169 211 IPR018392 -
Seca3g02201 386 ProSiteProfiles LysM domain profile. 102 149 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02201 Seca-Chr3 39034019 39037338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02201 5 322 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 74.845 1.15e-179 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02201 - - gmx:100808966 567.77