Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03641 ATGGCTGAGGCTCAGAAGGATTCGGGTATCAGGCTATTTGGCCGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTTTGGACCCACGGATGCTTTCAGCAGCACAAAGAAAACAGAAGGGGAAACACCTTGTGCAGAAAATTCTGAGCAACAAGAGAACTCTTCTGATTTAAGGGATAGTAAACATGATTCCCAACACAATGTTCAGGAAAATGAGCCAATAGTAAATTCCAAGCCTGTGGAGGATAATATGGAGAATGATAATACAGATCAAGATAAAGTCTTAAAGAAACCAGACAAGATTCTTCAGTGTCCAAGATGCAACAGTTTAGACACCAAGTTTTGTTATTTCAATAACTATAATGTTAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGAAGGCGGAAGAATAAGCACCTAGCCTCTCAATACCGGCATGTTATAGTAACCTCTGATGGAATTCCAACCTCTAGGCTAGAAACCACAGTCTCAACTGGTCACCAACATATCTCAGGTCTTGATTCCTCAGCTGCTTTCAGGTCTTCAATAGATAATGGGACTGTCTTAAAATTTGGTCCAGATACCCCTCTCTATGAATCAATGGAGTCAATGCTTAATCTTAGAGACCAGAAAAGAAGTGCTGATGGGAGTTCTCTCAGTTGTGTAGAATATGGAGAGGAACCATCCTTATGTGGATCTTCTGTGGTAAATACTGGTACTCAAGGAAATGAATCATCAAACAATAATACATCAAATTGGTTGCAGTGTTACCCTGTTCCTCCATGTGTATTACCATGGAATCCAGGTTGGAATAATGTTGCTTCCATGGCTGCAGTTCATCAGTCTTCAGCACCAATGTGTAACCCCTATAGCACTGGCCCCACTGCAATGCAATGGTGTCCCACACCAATGGTGGCAATTCCTGGCATTTGCCCGCCAAACATACCTTTGCAACTTGTATCAGCTCCATACTGGAATGGAACACCACTTAGGGCTGCTGGAAATGGGACAGTATCAATAGGATCCAATGCTTGCCTTTCACCTTCATCCTCCACTAGTAACAGTTGCTGCTCAGGCAATGGCTCCCCAACTCTGGGAAAACACACTAGAGATACTGTTTTCACAGATGAAGAGAGATCAGAAAAGTGTGTTTTGGTTCCAAAGACCATTAGAATTGATGGCTCAAATGAGGCCTCAGAAAGTCCTGTAAGGGCTACAATAGCTATCAAGCCTGATAAACAGCAGCAACCTGTATCAAATGGTGATATTTTGAAGAAAATAGAATCTAAAGGAGAAGGCAAAGATCGCGTATTGGGTACATCTCAGATCTTGGAAGCCAACCCAGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGGGCATATAA 1443 0.431 MAEAQKDSGIRLFGRKIPVPECQIPANFGPTDAFSSTKKTEGETPCAENSEQQENSSDLRDSKHDSQHNVQENEPIVNSKPVEDNMENDNTDQDKVLKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHVIVTSDGIPTSRLETTVSTGHQHISGLDSSAAFRSSIDNGTVLKFGPDTPLYESMESMLNLRDQKRSADGSSLSCVEYGEEPSLCGSSVVNTGTQGNESSNNNTSNWLQCYPVPPCVLPWNPGWNNVASMAAVHQSSAPMCNPYSTGPTAMQWCPTPMVAIPGICPPNIPLQLVSAPYWNGTPLRAAGNGTVSIGSNACLSPSSSTSNSCCSGNGSPTLGKHTRDTVFTDEERSEKCVLVPKTIRIDGSNEASESPVRATIAIKPDKQQQPVSNGDILKKIESKGEGKDRVLGTSQILEANPAAISRAHAFQEGI. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03641 480 PANTHER CYCLIC DOF FACTOR 2 1 478 IPR045174 GO:0003700|GO:0006355
Seca2g03641 480 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
Seca2g03641 480 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Seca2g03641 480 MobiDBLite consensus disorder prediction 54 70 - -
Seca2g03641 480 MobiDBLite consensus disorder prediction 29 53 - -
Seca2g03641 480 MobiDBLite consensus disorder prediction 21 96 - -
Seca2g03641 480 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03641 Seca-Chr2 112534200 112536715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03641 7 478 C2C2-Dof Transcription Factor Family AT5G39660 33.708 2.23e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca2g03641 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03641 - - gmx:100813787 757.288