Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01969 ATGGTTTATACTTCCCTTCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAGCAACCAAATCATCAAGGGGAAAATACTGGTGTAACTTCCCCTCTTCTACACTCTACACTACCACCGCCACCGCCTCCGGCCCCATCGCAGCCTCATGGAGGCTCGATTAGGCCGGGTTCGATGGCAGATAGGGCTCGAATGGCCAACATACCTATGCAAGAAGCTCAACAAAAATGTCCAAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACAAGAGGCGGCGCCCTCCGCAACGTCCCCGTCGGCGGAGGTTGCCGGAGAAACAAGAGAAACAAATCAACCAACACCGCCGCGGCCACCTCCAAGTCTCCGGCAACCTCCGATCGCCAAACCGGCAGCTCCTCCGCCGTTGACATGGCAGGCCTCGGCCCCACGGCACCGCCGGCAATGAGATTCATGGCTCCATTGCATCAACTAAGTGATCAACACCACCATATTGGAGAGATAGGGTTAAACTATGGGTTGATTGGAGGAGTAGGAGAGTTGAATTTCAACACTAGTTTGGGTGGCGGTGGTAATTCTTTGTTATCTTCTGTTGGTTTGGAACAATGGAGAGTACCACAAACTCACCAATTTCCCTTCTTGGCTGGTTTAGAAGCTTCATCATCACATGGGTTGTTGTACCCTTTTGAAGGTGGTAGTAGTAATAGTACTACAACTTCTGGGGTGATATCTCAACTTGCTTCAGTGAAAATGGAAGATAATAATAATCATAATCATAATCATGAACTTGGTTTGTCAAGACAATTCTTGGGAATCAACAATCCAACAAGTGATCAGCAATATTGGACAAGTGGTGGTGGTGGTGCTACTTCAGCTTGGACAGATCTTTCAGCTTTTAGCTCTTCTTCTGCTACTACCAATCCACTATAG 993 0.4794 MVYTSLPAYIDPANWQQQQQPNHQGENTGVTSPLLHSTLPPPPPPAPSQPHGGSIRPGSMADRARMANIPMQEAQQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKSTNTAAATSKSPATSDRQTGSSSAVDMAGLGPTAPPAMRFMAPLHQLSDQHHHIGEIGLNYGLIGGVGELNFNTSLGGGGNSLLSSVGLEQWRVPQTHQFPFLAGLEASSSHGLLYPFEGGSSNSTTTSGVISQLASVKMEDNNNHNHNHELGLSRQFLGINNPTSDQQYWTSGGGGATSAWTDLSAFSSSSATTNPL. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01969 330 MobiDBLite consensus disorder prediction 128 158 - -
Seca2g01969 330 MobiDBLite consensus disorder prediction 16 59 - -
Seca2g01969 330 MobiDBLite consensus disorder prediction 121 160 - -
Seca2g01969 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 50 243 IPR045174 GO:0003700|GO:0006355
Seca2g01969 330 MobiDBLite consensus disorder prediction 36 51 - -
Seca2g01969 330 MobiDBLite consensus disorder prediction 16 35 - -
Seca2g01969 330 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Seca2g01969 330 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Seca2g01969 330 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01969 Seca-Chr2 41806441 41807871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01969 1 323 C2C2-Dof Transcription Factor Family AT2G37590 37.360 1.89e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca2g01969 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01969 - - gmx:100796820 423.32