Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00587 ATGTCTGAAGCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGCTTCCGGAGATCCAGGCCGGATCCGGAGACTCCGCCGAAGCTCCGCCTTCATCTTCTGGGGATGTTGTCGATGAGAGTGTTGATCAGAATCACGCTTCTTCCACCAACTCTTCGAGGGAGTCTCACACCAACGAGGATGCAAAAGAGCAAGAGATTGAGAAGATCCATTCACATTTGTTTTCTTCGAATGAAGACACTTTGGGAGAAAAACCAACTGATGATAAAAAGGAAGATGGAGCCCCCACCCAACTATCAGAGGAGTTCACCAATCCAGATACAGCCTCTGGGACCGGTGAAGAATCTGTTACCCTGTCCACCGAGAGGGAGGCTACTACTACATTGAAAACTTCAAAGACTGAAGAAGAACAGGGTGAGACAAGTAAATCACAGGATAAGAACCTCAAAAAACCAGACAAAATACTGCCTTGTCCCCGCTGTAATAGCATGGAGACCAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGCCATTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGTGGAACCATGAGGAACGTACCTGTAGGTGCTGGTCGCAGGAAGAACAAAAGCTCTTCTTCTCACTACCGCCAGATCACTGTCTCTGAAGCATCACTCCAGAATACTCGGACAGACTTGCCAAATGGAGCTCATCATCCTTCCTTGAAGTGCAATGGTACAGTCCTTACCTTTGGATCTGATACACCCTTGTGTGAATCAATGGCTTCTGTTCTGAACCTTGCTGATAAAACAGTGCACAATTACCCAACAAATGGATTTCATAATCCTGAAGAACTAAGACTTCCTGTTCCCCATGCCAATGGAGAAAAAGGAGATGATCAATCCAATAAATCTTCTGTTACCTCCACAAAGTCAATTGAAGGTGCAAGCACCAACGGATCCCAAGAACAAACTATGCAGAATTGTCAGAGCTTCCGACCACAAGTTCCCTACTTTCCTGGGACCCCTTGGCCTTTCCCATGGAATCCAGTGCAGTGGAGCTCTCCAGTACCACCACCTGCTTTTTGCCCTCCAGGATTTGCCCTGCCATTTTATCCTGCAACAACTTATTGGGGTTGTACTGTGCCAGGCACATGGAACATCCCATGGATAGCTCAACCAACATCACCAAATGGTGCAGCCCCTAACTCTGGTCCTAACTCCCCAACTCTGGGTAAACATTCAAGGGAAGACAGTGTGCTCAAATCAAATGAGTCAGGTGGTGGGGATGGACATAGCAAAGAAAACAACAAAGAAAAGTGTCTGTGGATTCCAAAAACTTTGAGGATTGATGACTCAGGAGAAGCAGCAAAAAGCTCTATATTGACAAGTCTTGGGATAAAATATGATAAGGCTGACACAGTTCCTGGGAGAGGACTCTTTAAAGCATTCTCTTCAAAGAATGATGAAAAAAATCATTCAATGCAAGCCTCACCAGTCTTGCAGGCCAATCCAGCGGCATTGTCTAGGTCACTTAACTTTCATGAGACCTCATAA 1560 0.4603 MSEAKDPAIKLFGKTIPLPEIQAGSGDSAEAPPSSSGDVVDESVDQNHASSTNSSRESHTNEDAKEQEIEKIHSHLFSSNEDTLGEKPTDDKKEDGAPTQLSEEFTNPDTASGTGEESVTLSTEREATTTLKTSKTEEEQGETSKSQDKNLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEASLQNTRTDLPNGAHHPSLKCNGTVLTFGSDTPLCESMASVLNLADKTVHNYPTNGFHNPEELRLPVPHANGEKGDDQSNKSSVTSTKSIEGASTNGSQEQTMQNCQSFRPQVPYFPGTPWPFPWNPVQWSSPVPPPAFCPPGFALPFYPATTYWGCTVPGTWNIPWIAQPTSPNGAAPNSGPNSPTLGKHSREDSVLKSNESGGGDGHSKENNKEKCLWIPKTLRIDDSGEAAKSSILTSLGIKYDKADTVPGRGLFKAFSSKNDEKNHSMQASPVLQANPAALSRSLNFHETS. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00587 519 PANTHER CYCLIC DOF FACTOR 2 1 519 IPR045174 GO:0003700|GO:0006355
Seca2g00587 519 MobiDBLite consensus disorder prediction 394 439 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 491 519 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 203 227 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 130 156 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 84 99 - -
Seca2g00587 519 ProSiteProfiles Zinc finger Dof-type profile. 158 212 IPR003851 GO:0003677|GO:0006355
Seca2g00587 519 MobiDBLite consensus disorder prediction 58 77 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 207 227 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 100 129 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 416 439 - -
Seca2g00587 519 Pfam Dof domain, zinc finger 155 212 IPR003851 GO:0003677|GO:0006355
Seca2g00587 519 ProSitePatterns Zinc finger Dof-type signature. 160 196 IPR003851 GO:0003677|GO:0006355
Seca2g00587 519 MobiDBLite consensus disorder prediction 39 57 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 394 415 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 1 156 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 301 329 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 280 329 - -
Seca2g00587 519 MobiDBLite consensus disorder prediction 487 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00587 Seca-Chr2 8259738 8263354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00587 6 519 C2C2-Dof Transcription Factor Family AT5G39660 45.438 6.49e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca2g00587 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00587 - - gmx:100788247 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00587 2 8259738 8263354 Seca2g00587 2 8259738 8263354 ECH
Seca2g00587 2 8259738 8263354 Seca4g03260 4 56231824 56234463 ECH