Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00198 ATGGTCTTCCCTTCCCTTCCAATCTATCTTGATCCACCCAACTGGTCACAACAGCAACCTAATCAGGAAGCAGGAATTGGCATCCAAAATAATCCACCATCTCTCCAGCCGCCGCCACCGTCGATGGCGGCTGGAGGAGGTGGTGGCTACCAAGGCTCTATCAGACCAGGATCAATGGCTGATAGAGCCAGGTTGGCAAAGATACACCAACCAGATGCAGCACTGAAATGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTACAACAACTACAGCCTTTCACAGCCAAGACACTTTTGCAAGACATGTCGCCGTTATTGGACAAGAGGAGGTGCACTCAGAAACGTTCCTGTTGGTGGTGGTTGTAGAAGGAACAAAAGAACCAAAGGAACATCAAAGTCTCCAATGAAATTACCTCATCAAAGTTCTAGTACTGCTGCTGGAGGAGGTGGTTCTAGCTCTGCAAGTGCAAATTCTTCTTCTAATGGTTGCACTAGTACTACTGATTTGAATGTGGTGATCCCTCATTTGCCACCACCAACTCATCAATTGCCATTCTTGTCCTCTTTGCATCATTATAACAATGACTTGGTCTCAAATTTTGGGACAACCCCAACATCTTTGGTGGCAAGAAATGGCAACAATAATGGTAGTGATATTGGTGAGTTTCAAATTGGTACTAGTTCTTCTTCTTCTCCTTCTGTTTTGTTGTCAAGTGGCATTGGTGAGCAATGGAGGTTGTCCAATCTGCAACAAGTCCAAGTTCATCAACAACAGCATCAACAATTCCCTTTTTTGACTAATTTGGAACCACAAATTGGTTTGTTTCAGTTTGGTGGAGAAAATAATACTAATAATAACAATGATGGAGGTGAGCGGTTATTATTTAACCGTTCTAATAAGGCAATGGAGTCTTCTTGTGGTGTGATCAGTGGAACAATGATGCCTCCTCAGGTTAACACAATAAAAATGGAAGAAAATGATCAAGGGTTGAGTTTGCCAAAAAATCTCTTGAGTGGTTCAACAGGAAATGATCTATTTTGGAATGGAAATGGCAATGCATGGAGTGAAGTTCCTAGTTTCACTCCCTCATCTAGCCACTTCTTGTGA 1116 0.4238 MVFPSLPIYLDPPNWSQQQPNQEAGIGIQNNPPSLQPPPPSMAAGGGGGYQGSIRPGSMADRARLAKIHQPDAALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGTSKSPMKLPHQSSSTAAGGGGSSSASANSSSNGCTSTTDLNVVIPHLPPPTHQLPFLSSLHHYNNDLVSNFGTTPTSLVARNGNNNGSDIGEFQIGTSSSSSPSVLLSSGIGEQWRLSNLQQVQVHQQQHQQFPFLTNLEPQIGLFQFGGENNTNNNNDGGERLLFNRSNKAMESSCGVISGTMMPPQVNTIKMEENDQGLSLPKNLLSGSTGNDLFWNGNGNAWSEVPSFTPSSSHFL. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00198 371 ProSitePatterns GMC oxidoreductases signature 2. 230 244 IPR000172 GO:0016614|GO:0050660
Seca2g00198 371 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Seca2g00198 371 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 265 IPR045174 GO:0003700|GO:0006355
Seca2g00198 371 MobiDBLite consensus disorder prediction 12 57 - -
Seca2g00198 371 Pfam Dof domain, zinc finger 73 129 IPR003851 GO:0003677|GO:0006355
Seca2g00198 371 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Seca2g00198 371 MobiDBLite consensus disorder prediction 119 165 - -
Seca2g00198 371 MobiDBLite consensus disorder prediction 12 31 - -
Seca2g00198 371 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00198 Seca-Chr2 2929864 2931223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00198 35 331 C2C2-Dof Transcription Factor Family AT3G55370 39.731 7.65e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca2g00198 zf-Dof 9.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00198 - - vun:114185583 395.201