Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03351 ATGTCTGAGGCTCAGAAGGATTCGGGTATCAGGCTATTTGGCTGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCACGGATGCTTTCAGCAGCACAAAGAAAACAGAAGGGGAAACACCTTGTGCAGAAAATTCTGAGCAACAAGAGAACTCTTCTGATTTAAGGGATAGTAAACAAGAGTCCCAAGACAAAGTGCAGGAAAAAGAGCCAATAGTAAATTCCAAGCCTGTGGAAGATAATATGGAGACTGACAAAACAGATCAAGATAAAGTCTTAAAGAAACCAGACAGGATTCTTCAGTGTCCAAGATGCAACAGTTTAGACACCAAGTTTTGTTATTTCAATAACTATAATGTTAATCAACCCCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCTATAGGTGCTGGAAGGCGGAAGAATAAACACCTAGCCTCTCAATTCCGGCATGTTGTAGTAACCTCTGATGGAATTCCAACCTCCGGGCTAGAAACCACAGTGTCAACTGGTCACCAACATATCTCAAGTCTTGATTCCTCAATTGCTTTCAGGTCTTCAACAGATAATGGGACTGTCTTAAAATTTGGTCCAGATACCCCTCTCTGTGAATCAATGGAGTCAATGCTTAATCTTAGAAACCAGAAAAGAAGTGCTGATGGGAGTTCTATCAGTTGTGTAGAATATGGAGAGGAACCATCCTTATGTGGATCTTCTGTGGTAAATACTGCTACTCAAGGAAATGAATCATCAAACCATAATACATCAAATTGGTTGCAGTGTTACCCTGTTCCTCCATGGGTATTACCATGGAATCCAGGTTGGAATAATGTTGCTTCCATGGCTGCAGTTCATCAGTCTTCAGCACCAGTTTGTAACCCCTATAGCACTGGTTCAACTGCAATGCAATGGTGTCCCACACCAATGGTGGCAATTCCAGGCGTTTGCCCGACAAACATACCTTTGCAACTTGTATCAGCTCCATACTGGAATGGAACACCACTTTGGGCTGCTGGAAATGGGACAGTATCAATAGGATCTAATGCTTGCCTTTCACCTTCATCATCCACTAGTAACAGTTGCTGCTCAGGCAATGGCTCCCCAACTCTGGGAAAACACACTAGAGATACTGTTTTCACAGATGAAGAGAGATCAGAAAAGTGTGTTTTGGTTCCAAAGGCCATTAGAATTGATGATTCAAATGAGGCCTCAAAAAGCCCTATAAGGGCTACAATAGCTATCAAGCCTGATAAACAGCAGCAACCTGTATCAAATGGTGATATTTTGAAGAAAATAGAATCTAAAGGAGAAGGCAAAGATCGCGTATTGGGTGCATCTCAAATCTTGGAAGCCAACCCAGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGAGCATATAA 1443 0.4283 MSEAQKDSGIRLFGWKIPVPECQIPANSGPTDAFSSTKKTEGETPCAENSEQQENSSDLRDSKQESQDKVQEKEPIVNSKPVEDNMETDKTDQDKVLKKPDRILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQFRHVVVTSDGIPTSGLETTVSTGHQHISSLDSSIAFRSSTDNGTVLKFGPDTPLCESMESMLNLRNQKRSADGSSISCVEYGEEPSLCGSSVVNTATQGNESSNHNTSNWLQCYPVPPWVLPWNPGWNNVASMAAVHQSSAPVCNPYSTGSTAMQWCPTPMVAIPGVCPTNIPLQLVSAPYWNGTPLWAAGNGTVSIGSNACLSPSSSTSNSCCSGNGSPTLGKHTRDTVFTDEERSEKCVLVPKAIRIDDSNEASKSPIRATIAIKPDKQQQPVSNGDILKKIESKGEGKDRVLGASQILEANPAAISRAHAFQESI. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03351 480 MobiDBLite consensus disorder prediction 54 96 - -
Seca1g03351 480 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Seca1g03351 480 Pfam Dof domain, zinc finger 102 158 IPR003851 GO:0003677|GO:0006355
Seca1g03351 480 PANTHER CYCLIC DOF FACTOR 2 1 479 IPR045174 GO:0003700|GO:0006355
Seca1g03351 480 MobiDBLite consensus disorder prediction 21 96 - -
Seca1g03351 480 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Seca1g03351 480 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03351 Seca-Chr1 94726479 94728997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03351 7 479 C2C2-Dof Transcription Factor Family AT5G39660 33.024 4.37e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca1g03351 zf-Dof 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03351 - - gmx:100813787 764.222