Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03236 ATGGAACATAATTTGGGTCAAGACTCTGTACCTGCACCTGGGTCCTTTGATAAGTCTAGGGTTTTAAATGTTAAGCCATTAAGAACTCTTGTTCCTGTGTTCCCTTCACCATCTAATCCCTCTTCATCTTCAGCTCCACAAGGTGGTGCTCCTTTTGTTTGTGTCTCTCCTTCTGGTCCTTTCCCCTCTGGGGTTGCACCTTTTTACCCTTTCTTTATCTCACCGGAGTCCCAGAGGCTCTCTGAACAAAATGCACAAACCCCAACTGGTCAACGTGTGTCTGCTACCCCAATATCTTCTGCAGTTCCAATTAATTCATTTAGGACACCAACTGCTGGGGCTGCAAATGGAGATGTGGGTGGTTCATCACGGAGGAATAACCGGAGTCGTGGACAGTTCACAGAGGAAGATGGCTATGTTGAGATGAATGAAGTTGATGCAGAAGATGGAACTGGGGATGGGAGGACCAGACGCAGACAGAAGAGGGCAAAGGGACGGCGCGCTAGCGTTGGCGGTTCTGTTGATGTTGATCCGGATGCATTGGCTAATGAGATTCTCAAATCAATGAACCCCGCAGTTTTTGATGTTCTAAATCAACCTGATGGTAGCAGGGACTCGGTTGCATATACGCTTTTGATATATGAAGTGCTAAAAAGAAAGCTTGGACAAGTTGAAGAGACAACAAAGGAAGCCAGTTCTGGAGCAAAGCGGCCTGATTTGAAGGCAGGTACAATTATGATGAGTAAAGGGGTTCGGACTAACAGCAAGAAACGTATTGGAGTTGTGCCTGGTGTTGAGATTGGGGATATTTTCTTTTTTAGATTTGAATTATGTTTAGTAGGATTACATGCTCCTTCTATGGCTGGAATTGATTACTTGGGTTCCAAAACCAGTCAAGAGGAAGAGCCATTAGCTGTAAGTATTGTCTCATCTGGAGGGTATGAAGATAATGTGGAGGATGGGGCTGTGCTGATTTACAGTGGTCAAGGTGGGTCTAGTCGTGAAAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCATTGGAAAAGAGCCTGCATAGAGGTAATGAAGTGAGAGTAATTAGGGGTATGAGGGATGTAGCACATCCAACTGGGAAGGTATATGTCTATGATGGTCTTTACAAGATTCAGGATTCGTGGGTGGAGAAAGCAAAATCTGGCTTCAATGTATTTAAGTATAAACTAGTCAGGTTGCCTGGGCAGCCTGAAGCATATATGGTATGGAAATCCATTCAACAATGGACTGAGAAGTCTGTTTCAAGATCGGGGGTTATACTTCCTGATCTTACATCTGGGGCTGAAAATTTACCTGTTTGTCTTGTAAATGATGTTGATAATGAGAAGGGCCCTGCATATTTCACTTACTCCCCTACTCTCAAGAATTTGAAGCCAATAGCTCCTGTGGAATCTTCTGCTGGATGTTCTTGTGTTGGCGGATGCCAGATTGGCAATTTTAACTGTACTTGCATCCAAAAGAATGGAGGTTATCTCCCATATTCTGCAACTGCAGTACTTGCGGATCTAAAGTCTGTGGTATATGAGTGTGGTCCTTCTTGTCAGTGCCCTCCTAATTGCCGAAATCGGGTTTCCCAAGGTGGCTTGAAACTTCGTTTGGAGGTGTTTAGGACAAAGGATAAAGGTTGGGGTCTAAGATCATGGGATCCTATTCGTGCTGGAGCTTTCATATGTGAGTATGCAGGGGAAGTCATAGATAATGCTAGAGTAGAGGAGCTTGGCGGTGAAAATGAAGATGACTACATTTTTGACTCTACTCGCATATATCAGCAACTGGAAATTTTTCCTGGTGACACTGAAGCACCAAAGATCCCATTCCCCCTTTATATAACAGCAAAAAATGAAGGCAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGTCCAGTCTTACGCGAAAACAAGAATGAATCAGATCTCCACATTGCTTTCTATGCAATTAGACATATCCCTCCTATGGTAGAGTTAACCTATGATTATGGAATTGTTCTTCCTCTCAAAGTAGGTCAGAAGAAGAAGAAATGCTTGTGTGGATCTGTGAGATGCAGGGGTTACTTTTGTTAA 2121 0.4356 MEHNLGQDSVPAPGSFDKSRVLNVKPLRTLVPVFPSPSNPSSSSAPQGGAPFVCVSPSGPFPSGVAPFYPFFISPESQRLSEQNAQTPTGQRVSATPISSAVPINSFRTPTAGAANGDVGGSSRRNNRSRGQFTEEDGYVEMNEVDAEDGTGDGRTRRRQKRAKGRRASVGGSVDVDPDALANEILKSMNPAVFDVLNQPDGSRDSVAYTLLIYEVLKRKLGQVEETTKEASSGAKRPDLKAGTIMMSKGVRTNSKKRIGVVPGVEIGDIFFFRFELCLVGLHAPSMAGIDYLGSKTSQEEEPLAVSIVSSGGYEDNVEDGAVLIYSGQGGSSREKGASDQKLERGNLALEKSLHRGNEVRVIRGMRDVAHPTGKVYVYDGLYKIQDSWVEKAKSGFNVFKYKLVRLPGQPEAYMVWKSIQQWTEKSVSRSGVILPDLTSGAENLPVCLVNDVDNEKGPAYFTYSPTLKNLKPIAPVESSAGCSCVGGCQIGNFNCTCIQKNGGYLPYSATAVLADLKSVVYECGPSCQCPPNCRNRVSQGGLKLRLEVFRTKDKGWGLRSWDPIRAGAFICEYAGEVIDNARVEELGGENEDDYIFDSTRIYQQLEIFPGDTEAPKIPFPLYITAKNEGNVARFMNHSCSPNVLWRPVLRENKNESDLHIAFYAIRHIPPMVELTYDYGIVLPLKVGQKKKKCLCGSVRCRGYFC. 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03236 706 SMART G9a_1 255 410 IPR003105 -
Seca1g03236 706 Pfam SET domain 556 680 IPR001214 GO:0005515
Seca1g03236 706 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 243 425 - -
Seca1g03236 706 Gene3D - 242 427 IPR036987 -
Seca1g03236 706 ProSiteProfiles Pre-SET domain profile. 481 542 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g03236 706 ProSiteProfiles SET domain profile. 545 680 IPR001214 GO:0005515
Seca1g03236 706 SMART preset_2 435 529 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g03236 706 SUPERFAMILY SET domain 421 686 IPR046341 -
Seca1g03236 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 124 698 - -
Seca1g03236 706 MobiDBLite consensus disorder prediction 79 174 - -
Seca1g03236 706 Pfam Pre-SET motif 439 537 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g03236 706 Pfam SAD/SRA domain 259 410 IPR003105 -
Seca1g03236 706 Gene3D SET domain 428 705 IPR046341 -
Seca1g03236 706 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 705 IPR025794 GO:0016571
Seca1g03236 706 SUPERFAMILY PUA domain-like 242 425 IPR015947 -
Seca1g03236 706 SMART set_7 545 686 IPR001214 GO:0005515
Seca1g03236 706 ProSiteProfiles YDG domain profile. 260 406 IPR003105 -
Seca1g03236 706 MobiDBLite consensus disorder prediction 79 112 - -
Seca1g03236 706 ProSiteProfiles Post-SET domain profile. 690 706 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03236 Seca-Chr1 90901874 90907013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03236 1 705 Su(var)3-9 homologs AT1G73100 47.994 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca1g03236 SAD_SRA 1.6e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03236 K24405 - gmx:100805932 1186.79