Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00586 ATGTCTGAAGCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGCTGCCGGAGATCCAGGCCGGATCCGGAGACTCCGCCGAAGCTCCGCCTTCATCTTCTGGGGATGTTGTCGATGAGAGTGTTGATCAGAATCACGATTCTTCCACCAACTCTTCGAGGGAGTCTCACACCAACGAGGATGCAAAAGAGCAAGAGATTGAGAAGAGCAGTTCTCATTTGTTTTCTTCGAATGAGGACACTTTGGGAGAAAATCCAACTGATGATAAGAAGGAAGACGGAGCCCCCACCCAACTATCAGAGGAGTTCACCAATCCAGATACAGCCTCTGGGACCGGTGAAGAATCTGTTACCCTGTCCACCGAGAGGGAGGCTACTACTACATTGAAAACTTCAAAGACTGAAGAAGAACAGGGTGAGACAAGTAAATCACAGGATAAAAACCTCAAAAAACCAGACAAAATACTGCCTTGTCCCCGCTGTAATAGCATGGAGACCAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGCCATTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGTGGAACCATGAGGAATGTACCTGTAGGTGCTGGTCGCAGGAAGAACAAAAGCTCTTCTTCTCACTACCGCCAGATCACTGTCTCTGAAGCATCACTCCAGAATACTCGGACAGACTTGCCAAATGGAGCTCATCATCCTTCCTTGAAGTGCAATGGTACAGTTCTTACCTTTGGATCTGATACACCCTTGTGTGAATCAATGGCTTCTGTTCTGAACCTTGCTGATAAAACAGTGCACAATTACCCAACAAATGGATTTCATAATCCTGAAGAACTAAGACTTCCTGTTCCCCATGCCAATGGAGAAAAAGGAGATGATCAATCCAATAAATCTTCTGTTACCTCCACAAAGTCAATTGAAGGTGCAAGCACCAACGGATCCCAAGAACAAACTATGCAGAATTGTCAGAGCTTCCGACCACAAGTTCCCTACTTTCATGGGACCCCTTGGCCTTTCCCATGGAATCCAGTGCAGTGGAGCTCTCCAGTACCACCACCTGCTTTTTGCCCTCCAGGATTTGCCCTGCCATTCTATCCTGCAACAACTTATTGGGGTTGTACTGTGCCAGGCACATGGAACATCCCATGGATAGCTCAACCAACATCACCAAATGGTGCAGCCCCTAACTCTGGTCCTAACTCCCCAACCCTGGGTAAACATTCAAGGGAAGACAGTGTGCTCAAATCAAATGAGTCAGGTGGTGGGGATGGACATAGCAAAGAAAATAACAGAGAAAAGTGCCTGTGGATTCCAAAAACTTTGAGGATTGATGACTCAGGAGAAGCAGCAAAAAGCTCTATATTGACAAGTCTTGGGATAAAATATGATAAGGCTGACACAGTTCCTGGGGGAGGACTCTTTAAAGCATTCTCTTCAAAGAATGATGAAAAAAACCATTCAATGCAAGCCTCGCCAGTCTTGCAGGCCAATCCAGCGGCATTGTCTAGGTCACTTAACTTTCATGAGACTTCATAA 1560 0.4635 MSEAKDPAIKLFGKTIPLPEIQAGSGDSAEAPPSSSGDVVDESVDQNHDSSTNSSRESHTNEDAKEQEIEKSSSHLFSSNEDTLGENPTDDKKEDGAPTQLSEEFTNPDTASGTGEESVTLSTEREATTTLKTSKTEEEQGETSKSQDKNLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEASLQNTRTDLPNGAHHPSLKCNGTVLTFGSDTPLCESMASVLNLADKTVHNYPTNGFHNPEELRLPVPHANGEKGDDQSNKSSVTSTKSIEGASTNGSQEQTMQNCQSFRPQVPYFHGTPWPFPWNPVQWSSPVPPPAFCPPGFALPFYPATTYWGCTVPGTWNIPWIAQPTSPNGAAPNSGPNSPTLGKHSREDSVLKSNESGGGDGHSKENNREKCLWIPKTLRIDDSGEAAKSSILTSLGIKYDKADTVPGGGLFKAFSSKNDEKNHSMQASPVLQANPAALSRSLNFHETS. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00586 519 MobiDBLite consensus disorder prediction 394 439 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 203 227 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 130 156 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 85 99 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 491 505 - -
Seca1g00586 519 PANTHER CYCLIC DOF FACTOR 2 1 519 IPR045174 GO:0003700|GO:0006355
Seca1g00586 519 ProSiteProfiles Zinc finger Dof-type profile. 158 212 IPR003851 GO:0003677|GO:0006355
Seca1g00586 519 MobiDBLite consensus disorder prediction 55 72 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 207 227 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 486 505 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 100 129 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 416 439 - -
Seca1g00586 519 Pfam Dof domain, zinc finger 155 212 IPR003851 GO:0003677|GO:0006355
Seca1g00586 519 ProSitePatterns Zinc finger Dof-type signature. 160 196 IPR003851 GO:0003677|GO:0006355
Seca1g00586 519 MobiDBLite consensus disorder prediction 394 415 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 1 156 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 301 329 - -
Seca1g00586 519 MobiDBLite consensus disorder prediction 280 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00586 Seca-Chr1 7032480 7036121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00586 6 519 C2C2-Dof Transcription Factor Family AT5G39660 45.522 5.57e-117 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca1g00586 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00586 - - gmx:100788247 851.277