Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00196 ATGGTCTTCCCTTCCCTTCCAATCTATCTTGATCCACCCAACTGGTCACAACAGAAAATTTTACAGCAGGAAACAGGAATTGGCATCCAAAACAATCCATCACCTCTCCGGCCGCCACCGACGGTGGCGGCTGGAGGAGGTGACGGCTACCAAGGCTCTATCAGACCAGGATCAATGGCTGATAGAGCCAGGTTGGCTAAGATACACCAACCAGATGCAGCACTGAAATGTCCAAGATGTGAATCAACAAACACAAAATTCTGTTACTACAACAACTACAGCCTTTCACAGCCAAGACACTTTTGCAAGACATGTCGCCGTTATTGGACAAGAGGAGGTGCACTCAGAAACGTTCCTGTGGGTGGTGGTTGTAGAAGGAACAAAAGAACCAAAGGAACATCAAAGTCTCCAATGAAATTACCTCATCAAAGTTCTAGTATTGCTGTAGGAGGAGGTGGTTCTAGCTCTGCAAGTGCAAATTCTTCATCTAATGGTTGCACTAGTACTACTGATTTGAATGTGGTGATCCCTCATTTGCCACCACCAACTCATCAATTGCCATTCTTGTCCTCTTTGCATCATTATAACAATGACTTGATCTCAAATTTTGGGGCAACCCCAACATCTTTGGTGGCAAGAAATGGAAACAATAATGGTAGTGATATTGGTGAGTTTCAAATTGGTACTAGTTCTTCTTCTTCTCCTTCTGTGTTGTTGTCAAGTGGCATTGGTGAGCAATGGAGGTTGTCCAATCTGCAACAAATCCATAATCATCAGCAGAATCAACAGTTCCCTTTTTTGACTACTTTGGAACCACAAATTGGTTTGTTTCAGTTTGGTGGAGAAAATAATACTAATAACAATGATGGAGGTGGACGGTTATTGTTTAATCGTTCTAATAAGGCAATGGAGTCTTCTTGTGGTGTGAGTGGAATAATGATGCCTCCTCAGGTTAACACAATAAAAATGGAAGAAAATAATATTCAAGGGTTGAGTTTGCCAAAAAATCTCTTGAGTGGTTCAACAGGAAATGATCTATTTTGGAATGGAAATGGCAATGCATGGAGTGAAGTTCCTAGTTTCACTCCCTCATCTACCCACTTCTTGTGA 1110 0.4198 MVFPSLPIYLDPPNWSQQKILQQETGIGIQNNPSPLRPPPTVAAGGGDGYQGSIRPGSMADRARLAKIHQPDAALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGTSKSPMKLPHQSSSIAVGGGGSSSASANSSSNGCTSTTDLNVVIPHLPPPTHQLPFLSSLHHYNNDLISNFGATPTSLVARNGNNNGSDIGEFQIGTSSSSSPSVLLSSGIGEQWRLSNLQQIHNHQQNQQFPFLTTLEPQIGLFQFGGENNTNNNDGGGRLLFNRSNKAMESSCGVSGIMMPPQVNTIKMEENNIQGLSLPKNLLSGSTGNDLFWNGNGNAWSEVPSFTPSSTHFL. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00196 369 ProSitePatterns GMC oxidoreductases signature 2. 230 244 IPR000172 GO:0016614|GO:0050660
Seca1g00196 369 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Seca1g00196 369 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 256 IPR045174 GO:0003700|GO:0006355
Seca1g00196 369 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Seca1g00196 369 MobiDBLite consensus disorder prediction 120 165 - -
Seca1g00196 369 MobiDBLite consensus disorder prediction 136 165 - -
Seca1g00196 369 Pfam Dof domain, zinc finger 73 129 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00196 Seca-Chr1 2362055 2363732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00196 36 267 C2C2-Dof Transcription Factor Family AT3G55370 44.828 2.93e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca1g00196 zf-Dof 9.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00196 - - vun:114185583 404.831