Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06840 ATGAGAAACTATTTGCAGTTTCTTTGGCCTCATATCTTGTGTTTCCTATTATTCATGAGTGTTGTACTTATACATCTAGTTGAAACAAAATCCACTATAGAACCATGTAGCTCTGCAGAATCATGCCCCTCTCTTCTCTCTTATCTCTTGCCTTGGGACTCCAAGCTCTCTGAAATTGCAACTCGTTTCCATGTAAATGTTTCTGATATCTTGGCTGCAAACTCTGTTTTCCCCATAACACCATCAAGTTCTCATAAAATCCTTTGTGCAAAATCATTAGTTAAAATACCAATTTCATGTCCTTGTGTGGATGGCATAAGAAGGTCTATGTCAACCATTTACACTGTTCAGGCAGCTGACACACTTGCCTCCATATCAGATGGGTATGGTGGGTTAGTTAGTGCTCAACAAATTGAGATTGTGAACAGCATCAATGATACAAACCCTTTGGCATATGGAAGCAACCTTGTTATACCATTGCCATGCACATGCTTGAACAATGTTAACAATGGGGAAACAGCAATTTATATGTCATATGTGGTGCAGACAGGGGAGAGCTTGGGAAGCATAGCAGCAGCATTTGGTACTACAATTTCAGATTTGGAAACTGCAAATGGACTTGGCCAACCTAAAGTTGAACCAAGAGATATACTATCTGTTCCTGTTGCAGGTACTTGTACCGTCCTTTGCAGCATGTTCATCAGCAACTCTGAAGTGGTACAATGA 726 0.4022 MRNYLQFLWPHILCFLLFMSVVLIHLVETKSTIEPCSSAESCPSLLSYLLPWDSKLSEIATRFHVNVSDILAANSVFPITPSSSHKILCAKSLVKIPISCPCVDGIRRSMSTIYTVQAADTLASISDGYGGLVSAQQIEIVNSINDTNPLAYGSNLVIPLPCTCLNNVNNGETAIYMSYVVQTGESLGSIAAAFGTTISDLETANGLGQPKVEPRDILSVPVAGTCTVLCSMFISNSEVVQ. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06840 241 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Seca12g06840 241 SUPERFAMILY LysM domain 112 160 IPR036779 -
Seca12g06840 241 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 11 227 - -
Seca12g06840 241 Pfam LysM domain 179 221 IPR018392 -
Seca12g06840 241 Pfam LysM domain 56 80 IPR018392 -
Seca12g06840 241 Pfam LysM domain 114 159 IPR018392 -
Seca12g06840 241 Gene3D LysM domain 168 227 IPR036779 -
Seca12g06840 241 Gene3D LysM domain 107 167 IPR036779 -
Seca12g06840 241 ProSiteProfiles LysM domain profile. 112 158 IPR018392 -
Seca12g06840 241 SUPERFAMILY LysM domain 177 221 IPR036779 -
Seca12g06840 241 CDD LysM 178 207 IPR018392 -
Seca12g06840 241 CDD LysM 112 158 IPR018392 -
Seca12g06840 241 SMART LysM_2 113 159 IPR018392 -
Seca12g06840 241 SMART LysM_2 178 221 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06840 Seca-Chr12 160378809 160382146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06840 10 224 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 46.818 1.93e-57 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06840 - - gmx:100819382 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06840 12 160378809 160382146 Seca12g06840 12 160378809 160382146 ECH