Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06696 ATGGAGAAGAACTGGATTATGACTTTTCTCCTCCTCTCCCTTCTCCTCTTCCCAAATGCAGCAAGAGCTGCCATTAGTATAGGTGTTGGTGTTGGTGGTGGTGGTGGTGTAGGTGTTGGTGTTGGCGTTGGTTCTGGCAATGGTGGTGGTGGTGGTGGGGTTAACAGCCCAGGGCCTTCTGGATCTTCAGTGAACAATGCTTTCACAGCTCTTCAGGCGTGGAAATCTGCAATTACTGATGACCCACTGAAGATTTTAGATAATTGGGTTGGTTCTAATGTGTGTTCTTATAAAGGAGTGTTTTGTGATGGTTCTGTTGTTGCAGGAATAGATCTCAACCATGCAAATCTCCAAGGAACTCTTGTCAAAGAGCTATCTTTACTTGATGATATGACTCTTCTCCACCTCAACAGTAACAGATTTTCTGGTACAGTTCCTGATACATTCAAAGACCTCACCTCTCTTGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTTCCCACAGTTACTTTATACATGCCAAGACTCATCTACCTTGACCTCAGATTCAACTCCTTCTCAGGGTCACTTCCTGAACAACTTTTCAATAAGAGACTGGATGCAATATTTCTCAACAACAATCAATTTGGAGGTGAAATTCCACAAAATTTGGGCAATTCCCCTGCCTCAGTCATAAATTTAGCTAACAATAAGTTCAGTGGGAACATCCCAGCAAGTTTGGGGTTCATGAGTTCTCAACTCAAGGAGATTCTCTTCCTCAATAACCAGCTAACAGGTTGCATCCCTGATGGAGTAGGGATCTTCACTGAGATGCAAGTCCTTGATGTGAGCTTCAATTCATTAGAGGGTCATTTGCCAGACACAATATCTTGCTTGCAAGATATAGAGGTCCTCAATTTGGCACATAACAAGCTTTCTGGGGAATTATCTGACATGATCTGCTCTTTGAGAAGCCTAGTAAATCTAACTGTGGCTTACAATTTCTTTTCTGGTTTAAGCCAAGAATGCTCAAGGCTTTTCAATGTGGGTTTTGATTTCTCAGATAACTGCATTCCTGGAAGGAACATGCAGAGACCTCCACCAGAGTGCTCTGGGATCCCAGGTCTTAACTTGAATTGCCTAAGAATCCCTACTCCAAAACCTCTTGTTTGTGGTGCGCTGATTGCAAGTACCTCTAAGCACACAAATCTACGTTCATCATCATCTCCTTGA 1221 0.43 MEKNWIMTFLLLSLLLFPNAARAAISIGVGVGGGGGVGVGVGVGSGNGGGGGGVNSPGPSGSSVNNAFTALQAWKSAITDDPLKILDNWVGSNVCSYKGVFCDGSVVAGIDLNHANLQGTLVKELSLLDDMTLLHLNSNRFSGTVPDTFKDLTSLEELDLSNNQLSGPFPTVTLYMPRLIYLDLRFNSFSGSLPEQLFNKRLDAIFLNNNQFGGEIPQNLGNSPASVINLANNKFSGNIPASLGFMSSQLKEILFLNNQLTGCIPDGVGIFTEMQVLDVSFNSLEGHLPDTISCLQDIEVLNLAHNKLSGELSDMICSLRSLVNLTVAYNFFSGLSQECSRLFNVGFDFSDNCIPGRNMQRPPPECSGIPGLNLNCLRIPTPKPLVCGALIASTSKHTNLRSSSSP. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06696 406 FunFam Leucine-rich repeat extensin-like protein 1 68 222 - -
Seca12g06696 406 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 240 335 - -
Seca12g06696 406 Gene3D Ribonuclease Inhibitor 225 390 IPR032675 -
Seca12g06696 406 SUPERFAMILY L domain-like 66 344 - -
Seca12g06696 406 SMART LRR_typ_2 271 295 IPR003591 -
Seca12g06696 406 SMART LRR_typ_2 152 175 IPR003591 -
Seca12g06696 406 SMART LRR_typ_2 319 342 IPR003591 -
Seca12g06696 406 SMART LRR_typ_2 176 200 IPR003591 -
Seca12g06696 406 SMART LRR_typ_2 128 151 IPR003591 -
Seca12g06696 406 PRINTS Leucine-rich repeat signature 295 308 - -
Seca12g06696 406 PRINTS Leucine-rich repeat signature 155 168 - -
Seca12g06696 406 Pfam Leucine rich repeat 132 188 IPR001611 GO:0005515
Seca12g06696 406 Gene3D Ribonuclease Inhibitor 175 224 IPR032675 -
Seca12g06696 406 Gene3D Ribonuclease Inhibitor 66 174 IPR032675 -
Seca12g06696 406 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 61 381 - -
Seca12g06696 406 Pfam Leucine rich repeat N-terminal domain 65 103 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06696 Seca-Chr12 159051053 159052273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06696 64 369 Leucine-rich Repeat extension Gene Families AT3G24480 52.396 3.14e-105 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06696 - - gmx:100820611 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06696 12 159051053 159052273 Seca12g06696 12 159051053 159052273 ECH