Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05877 ATGGCTCAAGTACTAGAAAGTGGCCAAAACAGTGAAGGGATTAAGCTGTTTGGCACAACGATTAAGTTACATGGAAGGCAAAGAAACAAAGATAGTGAAGATGGAGCAGAGGATCAGGAGAAAAGGCCTGATAAGATCATACCATGCCCAAGATGTAAGAGCATGGAAACCAAATTCTGTTACTTCAATAACTATAACGTCAATCAGCCTAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGGGCCCTCCGCAACGTCCCCGTAGGTGCCGGCCGCCGAAAGGCCAAGCCACCATGCCTTGGCCCCAATGGTTTCCCGGAGTTTGATGGATCCACCGTCCACCAGTTTGGTTTAGATGAATGGCATCTTGCCACCATGGTTCACGGTGATTTCCGGCAGCTTTTTGCATCTAAACGGCGGAGGACTAGCTCAGGTGCTTGCTCAACCCTCGTTCTCTTCTTTATTTATTTATTTTTTATCAAATTTAAATTTAAAACTCTATACATAATTATTAGCATTAAAAACGTAAGTATATTAAATTATAAGAGTGTGTGTTTTGTCAAACTCAAGTTTTGA 588 0.4405 MAQVLESGQNSEGIKLFGTTIKLHGRQRNKDSEDGAEDQEKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCLGPNGFPEFDGSTVHQFGLDEWHLATMVHGDFRQLFASKRRRTSSGACSTLVLFFIYLFFIKFKFKTLYIIISIKNVSILNYKSVCFVKLKF. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05877 195 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Seca12g05877 195 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Seca12g05877 195 MobiDBLite consensus disorder prediction 25 46 - -
Seca12g05877 195 Pfam Dof domain, zinc finger 45 100 IPR003851 GO:0003677|GO:0006355
Seca12g05877 195 PANTHER CYCLIC DOF FACTOR 2 31 100 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05877 Seca-Chr12 150461736 150462323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05877 9 145 C2C2-Dof Transcription Factor Family AT1G29160 56.548 5.71e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g05877 zf-Dof 5.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05877 - - vra:106779806 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05877 12 150461736 150462323 Seca12g05877 12 150461736 150462323 ECH