Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05499 ATGGTTTTTCCTAAACCACCTTCTGAGTCTGATCTCTTTCTTCACTCTAATTTTGCTTCTCGTTATGCCAGGGACTCTCTTCCTAGGTTCAGCATGCCAGAGAACTCAATGCCTAAGGAATCTGCATACCAGAACATACACGATGAGCTACAGCTTGATGCAAATCCAAAGCTGAACTTGGCTTCCTTTGTGACCACATCCATGGAGGAAGAATGCAACAAGCTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGATGAGTACCCTGTTACCACTGATCTTCATGTACTGACAAGAATTTTCTTTTTTGCAAAACAGAATCGTTGTGTGAACATGATAGCACGTTTGTTCAATGCTCAAATTGGAGAAAATGAAACTGCAATTGGAGCAGGAACCGTTGGATCATCTGAAGCCATAATGCTGGCAGGCCTTGCTTTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCTGAGGGCAAGCCCTATGATAAGCCTAACATGGTCACTGGTGCCAATGTGCAGGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAATTGAGGGAAGTGAAGGTGAGAGAAGGCTACTATGTGATGGACCCTGTTAAGGCTGTTGAGATGGTGGATGAGAACACAATTTGTGTGGCTGCAATCTTGGGTTCAACTTATAATGGAGAATTTGAAGATGTCAAGCTCTTAAATGACCTGCTGCTAGAAAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTTGATGCTGCTAGTGGTGGCTTTATTGCTCCTTTCCTTTATCCAGAGCTAGAATGGGATTTCAGACTCCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAATATGGGCTTGTTTATGCTGGAATTGGATGGGTTATATGGAGGAGCAAGGAAGACTTGCCAGAAGATCTCGTCTTCCATATTAATTACCTTGGAGCTGACCAACCCACCTTCACCCTGAATTTCTCTAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAATTCGCCTTGGCCAAGAGGGGTACCGGAGTATAATGGAGAACTGCAGAGAAAATGCTATGGTGCTGAAGGAACACTTGGAAGAAACTGGATGCTTTAACATACTCTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTCTAAAAGACAGAAGCCATTATGATGAATTCAAGATATCAGAGATGTTGAGGCGCCATGGTTGGATAGTGCCAGCATATCCAATGCCACCTGGTGCACAGCACATCAATGTGCTCCGTGTGGTGATCAGGGCTGAGTTTTCACGCACACTTGCTGAACGCCTTGTGCTTGACATAAAAAATGTGCTGCATGAGCTTGAGAAACATGTCCCCAAGCACACTGCCAAAGTGAACAACAACATTAAGGAAGAGAAGGACTTGGTTGAAAGTGGGATCAAGAAAACTGCATTGGAAGCACAGAAGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATCATGGCTGCCTAG 1521 0.4359 MVFPKPPSESDLFLHSNFASRYARDSLPRFSMPENSMPKESAYQNIHDELQLDANPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPVTTDLHVLTRIFFFAKQNRCVNMIARLFNAQIGENETAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNMVTGANVQVCWEKFARYFEVELREVKVREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVLKEHLEETGCFNILSKDNGVPVVAFSLKDRSHYDEFKISEMLRRHGWIVPAYPMPPGAQHINVLRVVIRAEFSRTLAERLVLDIKNVLHELEKHVPKHTAKVNNNIKEEKDLVESGIKKTALEAQKEIIAQESNKRQKIMAA. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05499 506 Gene3D - 372 459 - -
Seca12g05499 506 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 392 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca12g05499 506 FunFam Glutamate decarboxylase 4 65 - -
Seca12g05499 506 Gene3D - 66 371 IPR015421 GO:0003824
Seca12g05499 506 Gene3D - 1 65 - -
Seca12g05499 506 PANTHER GLUTAMATE DECARBOXYLASE 9 500 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca12g05499 506 FunFam Glutamate decarboxylase 372 459 - -
Seca12g05499 506 FunFam Glutamate decarboxylase 66 371 - -
Seca12g05499 506 SUPERFAMILY PLP-dependent transferases 16 457 IPR015424 -
Seca12g05499 506 NCBIfam glutamate decarboxylase 16 455 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05499 Seca-Chr12 145889330 145892710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05499 1 494 Calmodulin-binding Proteins AT2G02010 75.101 0.0 775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05499 12 145889330 145892710 Seca12g05499 12 145889330 145892710 ECH