Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05454 ATGAGATTCTCAGCGGTGTGTTTTGTCCTATTATTATTGGTTGTTGTAGAAGCATCCACATGTTTCACTTTCAACACAGAGAAAAAGCTATCTGAATTCAACCACAAACTTGAGCAAAAGCTAGCTATTACTCCTATAGCATCACCACCACCTACTTCTGCTTCAGCAACAAAAATGGGTGGAAGGGTTTTTTACCTGAGTGAATATGGTGCGGACCCAACAGGGACACAAGAGAGCAGTGATGCAATTTTGAAAGCAGTGGAGGATGCTTTTGAGGTGCAGAAGGGTCTTGAATTGGTAGCAGGGGTGAATGACCTTGGAGGTGTTGTGATTGATTTGCAAGGTGGAAACTACAAAATCAGTAAACCCATTACCTTCCCTTCCTCTGGTGGTGGCAATGTTGTGGTAAAAGGAGGGACCTTGAGAGCATCCGATACTTTTCCTGGTGATCGACATTTAGTTGAGCTATGGTCATCAAATTCCCAAAAACTTGATACAACAGAATCTTTCCATGATGATGACCTCAACAGCATTAAAGCCCAAAATAATGAAATCCACTATGAAGGCATAACCTTCAGAGACATCCTCTTTGATTCAAGCTACAGAGGAGGAGGGATTTTCATTGTTGATTCTGCTAGAACCAGGATCAACAATTGTTTCTTCCTTCATTTCACCACAGAAGGAATTCTAGTCCAGCAAGGACATGAGACCTTCATATCAAGTTGTTTTCTTGGACAACACTCAACAGTTGGTGGAGACAAAGGTGAGAAGGACTTTTCAGGGGTTGCAATTGATCTTGCTAGTAATGATAATGCAATCACAGATGTTGCAATTTTCTCAGCAGCCATTGGTATTGTGTTAAGGGGTCAAGCTAACATTCTAAATGGGGTACATTGTTATAACAAGGCAGCATCTTTTGGTGGCATTGGTATCTTAGTGAAATTGCCAGGAAATTCACAAACTAGAATTGACAATTGTTATTTGGATTATACTGGTATAGTCATGGAGGACCCTGTTCAAGTTCATGTCACAAATGGGCTATTTCTAGGGGATGCTAATATTTTATTAAGGTCTGTTAAAGGTCAAATTTTGGGGTTAAATATAGTGGATAATATGTTCAGTGGTGACCCCAATAAGAAGGTTCCAATTGTAAATCTAGATGGGGAATTTAGTAACATTGATCAAGTGGTGATTGATCGAAACAATGTGAATGGCATGGGATTGAAATCAACTTCTGGGAAGTTAACGGTGAGTGTAAATGGCACAAAGTGGGTGGCTGATTTTTCATCAGTTTTGGTATTTCCTAATAGGATTAGTCATTTTCAATATTCATTTTATGCCCAAGATGAGCCTAAATTTGTAGCACATTCTGTGACCAATGTGTCAGGTAATGTTGTAACTGTGGAGAGTGAGAAAGAAGCTAAAGGGTTGGTCTCCTTTATTGTTGAACAATAA 1455 0.3952 MRFSAVCFVLLLLVVVEASTCFTFNTEKKLSEFNHKLEQKLAITPIASPPPTSASATKMGGRVFYLSEYGADPTGTQESSDAILKAVEDAFEVQKGLELVAGVNDLGGVVIDLQGGNYKISKPITFPSSGGGNVVVKGGTLRASDTFPGDRHLVELWSSNSQKLDTTESFHDDDLNSIKAQNNEIHYEGITFRDILFDSSYRGGGIFIVDSARTRINNCFFLHFTTEGILVQQGHETFISSCFLGQHSTVGGDKGEKDFSGVAIDLASNDNAITDVAIFSAAIGIVLRGQANILNGVHCYNKAASFGGIGILVKLPGNSQTRIDNCYLDYTGIVMEDPVQVHVTNGLFLGDANILLRSVKGQILGLNIVDNMFSGDPNKKVPIVNLDGEFSNIDQVVIDRNNVNGMGLKSTSGKLTVSVNGTKWVADFSSVLVFPNRISHFQYSFYAQDEPKFVAHSVTNVSGNVVTVESEKEAKGLVSFIVEQ. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05454 484 PANTHER POLYGALACTURONASE QRT3 11 484 IPR039279 GO:0004650
Seca12g05454 484 Gene3D - 67 479 IPR012334 -
Seca12g05454 484 SUPERFAMILY Pectin lyase-like 62 408 IPR011050 -
Seca12g05454 484 FunFam Polygalacturonase QRT3 66 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05454 Seca-Chr12 145201935 145207291 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05454 12 145201935 145207291 Seca12g05454 12 145201935 145207291 ECH