Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05453 ATGGCAAAGGGGGTTGTTTGGTTATCCTCCAAACTAGTGCTATCAATCACCGTCCTCATAACAATCGGTGTGGGCTTAACAGAGGGTCAACCAGAGGCACATTTCAAGTGCACCGTAGAGAACGCCACGTGTCATGGCCTAGCCGATTACTCAAACCCAAACGGCACCACACTACGCCACATCCAAACACTGTTCAACGTGAAGCACCTCCCAGACATACTCGGCGTTAACAACCTCCCCATCAACACCACAGGCTCTTACAGTGTGGGCCCCAACCAGGCCATTAAGGTGCCGTACCCTTGCAGATGCAGCAACCAAACGGGGCTTTCGGACCGGGTTCCGGTTTACAAAATCAAGCGAGGAGACACACTGGATGACATAGCTACAACGGTTTTTGCGCGTTTGGTTAAATACCAGCAGATCCAAGAAGCGAATAAGGCAAAGATACCGGACGCGAATAACATAACTGCTGGGGACACGATTTGGATTCCTCTGCCGTGTAGCTGTGATGAGGTGGATGGGAGCAGTGTGGTGCACTATGCACACGTTGTGATTGCAGGGAGTACCGTTGAGGGGATTGCTCAACAGTATGGTACCACACAGGGGATTCTTCTCTCTGTTAACGACATGACTGACCCTAAATCCCTTCAGGCCGGTCAGATTCTTGATGTTCCCCTCAAAGCTTGTTCCTCGAGTGTGAGGAATGATTCATTGGACTCCCCTTTGCTTGTCCCAAATGCTACTTATGTTTACACTGCTAATGAATGTGTCAAATGCAAGTGCGACTCCAGTAACAACTTTATATTACAATGCGAGCCATCCCAACACAAACCAATCAATCAATGGTCCGTTTGCCCTTCAATGGAATGCTCAAAGGACGTCTTCATTGGCAACATAACCTCCACAGATTCCTGCAACCGCACAGTCTGTGACTATGCTGGTTATAACACCAAAAATATCTCCACCATTCTTGCAATGCAGAACACCTGTGCTGGATCAAGTGATTCAGGTTCAGGAGCATCAAGGAGCATTGTGCATGACTGGGTTTGGAATAATCTTCTTATTGCCATTCACTTACTCCTCTTTTTTGTCTATCTTTTGTAG 1104 0.4774 MAKGVVWLSSKLVLSITVLITIGVGLTEGQPEAHFKCTVENATCHGLADYSNPNGTTLRHIQTLFNVKHLPDILGVNNLPINTTGSYSVGPNQAIKVPYPCRCSNQTGLSDRVPVYKIKRGDTLDDIATTVFARLVKYQQIQEANKAKIPDANNITAGDTIWIPLPCSCDEVDGSSVVHYAHVVIAGSTVEGIAQQYGTTQGILLSVNDMTDPKSLQAGQILDVPLKACSSSVRNDSLDSPLLVPNATYVYTANECVKCKCDSSNNFILQCEPSQHKPINQWSVCPSMECSKDVFIGNITSTDSCNRTVCDYAGYNTKNISTILAMQNTCAGSSDSGSGASRSIVHDWVWNNLLIAIHLLLFFVYLL. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05453 367 ProSiteProfiles LysM domain profile. 114 163 IPR018392 -
Seca12g05453 367 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Seca12g05453 367 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 334 - -
Seca12g05453 367 CDD LysM 182 224 IPR018392 -
Seca12g05453 367 Gene3D LysM domain 171 239 IPR036779 -
Seca12g05453 367 CDD LysM 115 163 IPR018392 -
Seca12g05453 367 SUPERFAMILY LysM domain 180 225 IPR036779 -
Seca12g05453 367 Gene3D LysM domain 114 170 IPR036779 -
Seca12g05453 367 Pfam LysM domain 116 164 IPR018392 -
Seca12g05453 367 Pfam LysM domain 182 225 IPR018392 -
Seca12g05453 367 SMART LysM_2 115 164 IPR018392 -
Seca12g05453 367 SMART LysM_2 181 225 IPR018392 -
Seca12g05453 367 SUPERFAMILY LysM domain 115 165 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05453 Seca-Chr12 145197338 145199827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05453 12 322 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 46.474 6.11e-90 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05453 - - cam:101506878 483.026