Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05438 ATGGCGCCGAGCATCCAACTAACTTCCGCCGGCGCCGGCGCCGGCGAAGATTCCGGCGACCTCGAGGACGTGAGACTCCTGGATTCCTACGAGAAATACGACGTCGAAGACAACACGAGGCGGATTCAGGTCAGAATCTCCGGCATGACATGCGCTGCTTGCTCCAACTCCGTTGAGGCGGCTCTTAAGTCCGTTGACGGCGTCATCGAAGCATCTGTTGCCCTGCTTCAGAACAAAGCCGACGTCGTTTTCAACCGAAGCCTCGTTAAGGATGAAGACATTAAGAATGCGATTGAAGATGCAGGGTTTGAAGCGGAGATTTTACCCGAACCCGGTTCACTTGGACCGGACCGGCGGGGTGACGGCGCAGTCTTGGTGGGGCAGTTCACGATTGGGGGAATGACGTGTGCGGCGTGTGTGAATTCCGTGGAGAGCATTCTGAGGAACCTCTCGGGAGTGAAAAAAGCAGTGGTGGCTTTGGCTACTTCGCTGGGTGAAGTTGAGTATGATCCTAATGTGATTAGCAAGGAGGATATTGTTACTGCAATTGAAGATGCTGGTTTCGAGGCTTCGTTTGTGCAGAGTAGTGGGCAGGACGAGGTGGTTTTGGGGGTTGTTGGTGTGTATTCTTTGGTTGATGCTCAGGTTTTGGAAGGCATGCTCAGTGGGATGAAAGGGGTGAGGCAGTTCCGGTTTGATCCCGTGTTGAATGAACTGGATGTTGTGTTTGACCCTGAAGTTATTAATTCTAGATCGTTGGTTGATGGGATCCATGTGGGAAGCAATGGCAAGTTTAAGTTACATGTTAGAAACCCTTATGCCAGAATGGCTTCTAAAGATGTTTCAGAGACCTCAGCTATGTTTCGACTTTTTATTTCCAGCTTGCTTCTTAGTATTCCTCTCTTCTTCATGGGGGTAGTTTGTCCTCATATACCATTGGTATACTCCTTATTACTTTGGAGATGTGGGCCTTTCCTCATGGGTGATTGGCTGAAGTGGGCATTGGTGAGTCTTATCCAATTTGTGGTTGGGAAGCGCTTCTACATAGCAGCTATCAGAGCTCTTAGAAATGGTTCAACAAATATGGATGTCCTGGTTGCTTTGGGAACAACAGCTTCTTATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCTCTCACTGGATTTTGGTCTACAACATACTTTGAAACCAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCCATTAAGAAGTTAGTGGAACTTGCTCCTGCAACAGCTTTATTGGTTGTCAAAGATAAAGGTGGTAAATCTATTGAGGAAAGGGAAATAGATTCCTTGCTCATTCAACCTGGTGACACATTGAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACTGGTGAATCTATACCTGTTTCGAAGGAGGTCAATGCATCTGTTATTGGAGGTACGATCAATTTGCATGGTGTCCTTCACATTCAAGCAACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGCTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATACAAAAGTTTGCTGATTATGTAAGTATTGTGGTCATACTCTTGGGTTTGCAGGTAGCAAGCATATTTGTTCCTACAATTGTGGCTTTGTCATTATTGACACTATTGTGTTGGTACATTGCTGGGGCTCTTGGAGCTTATCCTGAAGAATGGCTGCCTGAAAATGGAAATCACTTTGTGTTTGCCCTTATGTTTTCAATATCTGTTGTGGTGATTGCATGTCCCTGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGAGTTGGGGCTAACAATGGCGTGTTAATTAAAGGAGGAGATTCCTTGGAAAGGGCTCAGATGGTGAAGTATGTTGTATTTGATAAAACAGGCACTTTAACTCAGGGGAAAGCCACTGTTACTGTTGCCAAGGTGTTCACAGGAATTGACCGTGGAGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACATCCACTGGGAAAAGCGATATTACAATATGCCCGCCATTTTCATTTCTTTGATGATTCCTCTCCAACCAATGGTACCCAGAATAATGCCAAGGAGTCAGGGTGGCTTTATGATGTCTCTGACTTCTCTGCTATTCCGGGAAAGGGTGTGCAGTGCTTTATAAATGGAAAGCGGATTTTGAGTTGCTTACTTGAGGCAGTATGTCCTGAACAGGTTGGTAACAGGAAGCTGCTGGTGGAAAGTGGCATTGATATTTCTACCGAAGTGGAAAATTTTGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTAGTAGCATTTGATGATGTATTAACTGGAGTCTTAGGGGTCGCAGACCCACTAAAGCGAGAAGCTTCTGTTGTTATAGAGGGCCTCAAGAAAATGGGAATCATACCTGTTATGGTCACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAGGAGGTTGGCATTGAAGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAGGCAGATGTTGTTCGTTCATTCCAGAAAGACGGAAGTATAGTTGCAATGGTGGGTGATGGTATCAATGACTCTCCTGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGTACAGATATAGCAATTGAAGCTGCTAACTATGTGTTGATGAGAGATAATTTGGAAGATGTGATCACAGCCATTGATCTTTCTAGGAAAACATTTTCTCGCATTCGTTTGAATTATGTGTTCGCAATGGCCTACAATGTTGTTGCTGTACCAGTTGCTGCTGGGGTTTTATTTCCTTCACTGGGGATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTCTCGTCCGTTAGTGTTGTATGTTCTTCTTTGCTTCTTAGAAGATATAGAAAACCCAGACTTACTACAATACTTGAAATAGTTGTAAATTAA 3045 0.4499 MAPSIQLTSAGAGAGEDSGDLEDVRLLDSYEKYDVEDNTRRIQVRISGMTCAACSNSVEAALKSVDGVIEASVALLQNKADVVFNRSLVKDEDIKNAIEDAGFEAEILPEPGSLGPDRRGDGAVLVGQFTIGGMTCAACVNSVESILRNLSGVKKAVVALATSLGEVEYDPNVISKEDIVTAIEDAGFEASFVQSSGQDEVVLGVVGVYSLVDAQVLEGMLSGMKGVRQFRFDPVLNELDVVFDPEVINSRSLVDGIHVGSNGKFKLHVRNPYARMASKDVSETSAMFRLFISSLLLSIPLFFMGVVCPHIPLVYSLLLWRCGPFLMGDWLKWALVSLIQFVVGKRFYIAAIRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSTTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKSIEEREIDSLLIQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESIPVSKEVNASVIGGTINLHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVSIVVILLGLQVASIFVPTIVALSLLTLLCWYIAGALGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLERAQMVKYVVFDKTGTLTQGKATVTVAKVFTGIDRGEFLTLVASAEASSEHPLGKAILQYARHFHFFDDSSPTNGTQNNAKESGWLYDVSDFSAIPGKGVQCFINGKRILSCLLEAVCPEQVGNRKLLVESGIDISTEVENFVIELEESAKTGILVAFDDVLTGVLGVADPLKREASVVIEGLKKMGIIPVMVTGDNWRTARAVAKEVGIEDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAANYVLMRDNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAVPVAAGVLFPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPRLTTILEIVVN. 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05438 1014 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 22 1009 - -
Seca12g05438 1014 NCBIfam heavy metal translocating P-type ATPase 362 997 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca12g05438 1014 FunFam Probable copper-transporting ATPase HMA5 778 945 - -
Seca12g05438 1014 SUPERFAMILY HMA, heavy metal-associated domain 36 110 IPR036163 GO:0046872
Seca12g05438 1014 Gene3D - 127 192 - -
Seca12g05438 1014 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Seca12g05438 1014 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Seca12g05438 1014 SUPERFAMILY HAD-like 658 994 IPR036412 -
Seca12g05438 1014 SUPERFAMILY HMA, heavy metal-associated domain 128 196 IPR036163 GO:0046872
Seca12g05438 1014 CDD P-type_ATPase_Cu-like 289 984 - -
Seca12g05438 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 383 977 IPR023298 -
Seca12g05438 1014 NCBIfam HAD-IC family P-type ATPase 401 570 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g05438 1014 NCBIfam HAD-IC family P-type ATPase 786 971 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g05438 1014 ProSitePatterns Heavy-metal-associated domain. 46 76 IPR017969 GO:0046872
Seca12g05438 1014 Pfam E1-E2 ATPase 431 638 - -
Seca12g05438 1014 Gene3D - 416 538 - -
Seca12g05438 1014 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Seca12g05438 1014 FunFam Copper-exporting P-type ATPase A 38 108 - -
Seca12g05438 1014 Gene3D - 39 110 - -
Seca12g05438 1014 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Seca12g05438 1014 PRINTS P-type cation-transporting ATPase superfamily signature 835 845 - -
Seca12g05438 1014 PRINTS P-type cation-transporting ATPase superfamily signature 659 673 - -
Seca12g05438 1014 PRINTS P-type cation-transporting ATPase superfamily signature 813 824 - -
Seca12g05438 1014 PRINTS P-type cation-transporting ATPase superfamily signature 888 907 - -
Seca12g05438 1014 PRINTS P-type cation-transporting ATPase superfamily signature 911 923 - -
Seca12g05438 1014 ProSiteProfiles Heavy-metal-associated domain profile. 40 106 IPR006121 GO:0046872
Seca12g05438 1014 SFLD p-type atpase 641 940 IPR044492 -
Seca12g05438 1014 SUPERFAMILY Calcium ATPase, transduction domain A 448 534 IPR008250 -
Seca12g05438 1014 Gene3D - 626 945 IPR023214 -
Seca12g05438 1014 Gene3D - 666 765 IPR023299 GO:0000166
Seca12g05438 1014 Gene3D - 768 819 IPR023299 GO:0000166
Seca12g05438 1014 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Seca12g05438 1014 CDD HMA 128 191 IPR006121 GO:0046872
Seca12g05438 1014 FunFam Copper-transporting ATPase 1, putative 416 538 - -
Seca12g05438 1014 PRINTS H+-transporting ATPase (proton pump) signature 860 876 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g05438 1014 PRINTS H+-transporting ATPase (proton pump) signature 888 904 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g05438 1014 PRINTS H+-transporting ATPase (proton pump) signature 919 944 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g05438 1014 FunFam Copper-transporting ATPase RAN1 666 756 - -
Seca12g05438 1014 Pfam haloacid dehalogenase-like hydrolase 655 902 - -
Seca12g05438 1014 CDD HMA 43 106 IPR006121 GO:0046872
Seca12g05438 1014 SFLD Haloacid Dehalogenase 641 940 - -
Seca12g05438 1014 FunFam Copper-exporting P-type ATPase A 125 193 - -
Seca12g05438 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 661 667 IPR018303 -
Seca12g05438 1014 NCBIfam copper ion binding protein 42 105 IPR006122 GO:0005507
Seca12g05438 1014 NCBIfam copper ion binding protein 128 190 IPR006122 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05438 Seca-Chr12 145062107 145068036 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05438 12 145062107 145068036 Seca12g05438 12 145062107 145068036 ECH