Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05437 ATGGCTAGAAACTTGATCGTTCGATCCTTAGCCCTTCGCCATGCAATAAAGAACACCGTTCGCCCACTCTTCACCCGCCATCTTTCTTCCATTTCCATTTCCAAACCTTCTCTCTTCGTCGCCACTATCGCCTCCTCTCAGATCTCCTTCCTCCCCTCTTTCCACCACTCCCGTTCCCTTTGCTCCGCCTCAGCTACTCCCGGTGTTGTCCTCGTTAATTCAGAGGAAGAGTTCAATAATATCCTCAGAAAAGTTCAAGATGACTCCTTGCACGCGATCTTCTATTTCACTGCAGTTTGGTGTGGACCTTGCAGGTTTATTTCACCTATAGTTGGGGAGCTTAGCAAGAAGTACCCTCATGTAACAACATACAAGATTGACATTGATCAGGAAGCAATTCAAGGCACATTGGGCAAGTTGCAGATTACATCTGTGCCAACACTCCATTTCTTCCAGAACGGGAAAAAGGCTGATGAACTCATTGGTGCTGATGTTGCACGACTGAACCATATTACAGAGAAACTCTTCAAATTTGCTTTCCAATTACATTTTTATGTATGGCAGACTCCAACTATTTCAAAGGACCCTCATGGAAGCAGATTGACCAAGCCCCTTACGCTTGTAGCGGCTGAACAACCCAGCATTCGACCACTCATCAATCTCTTAAAGGCCTGCGAGGAAAGTGGATCTCTTAAACAAGCAAATTGCATTCATGGGCATGTTTTAAAATCGGGTTGTGGTGACAAGGACTTGTTGGTGTTTTTGAATCATGCAACTCATGTGTACTCCAAATGCATGGAATATGAGGCTGCTCGTAAGGTGTTTGATAGTATGTCCCAAAGAAATGTTTTTTCTTCGACTGTCATGATTGTTGCGTCGAATGAGCATGGCTACTACCATGATGGGGTGGAGCTGTTTTGTATGATGTTGGAACAAGGTGAGCTGCTTGATGGGTTTGCTTTCTCTGCTGTTTTGCAGTCATGTGTTGGGTTAGAATCGATTGAGTTGGGTGAGGTGGTGCATGCCCAAGTTGTTAGAGGTTTTCTGACGCATACTGTTATTGGGACATCTCTTCTTAACTTGTATGCTAAGTTAGGAAAGAGTGAGAGTTCAATTAAGGTGTTCAACACCATGACAGAGCTTAATGTTGTCTCTTGGAATGCAATGATTTCAGGGTTTGCCTCTAATGGTCTGCACCTACAAGCGTTTCATTGTTTTATCAACATGATTGAAGCAGGGGTCACTCCTAATAGCTCCACCTTTATAAGTGTTGCCAAGGCAGCTGGGAAATTAGGTGACATTAACAAGTGTCATGAAGTTTACAGATATGCTTCTGAATGTGGATTACATTGCAATACTTCGGTTGGAACGGCTCTTATAGATATGTACTCTAAGTGTGGGGCTTTGTCTGATGCACAAGTTCTTTTCGATTCGAGGTTCAATGGTTGTCTGGTTAACACACCTTGGAATGCAATGATAACAGATGTTTACACATTCTGTTGTGTGTTCAACTCAATTGCTGCTTTGAAGTGTCTGAAATCCTTAAAGGAGACTCACCGGATGGCTCTGAAATGTGGATTTGATTTGATGAAAATTAGTGCATCAAATTCCCTTGCTGATGCATATGCCAAATGTGAGTCACTTGAAGCTGGAGAGAAGGTATTCAATAGAATGGAAGAGAAAGACATAGTATCTTGGACAACCATGGTGGCTGCATATTGTCAATATACTGAATGGGGGAAAGCCTTGGCCATCTTTTCACAAATGCGCAATGAAGGCTTTGACATAGTATCTTAG 1797 0.429 MARNLIVRSLALRHAIKNTVRPLFTRHLSSISISKPSLFVATIASSQISFLPSFHHSRSLCSASATPGVVLVNSEEEFNNILRKVQDDSLHAIFYFTAVWCGPCRFISPIVGELSKKYPHVTTYKIDIDQEAIQGTLGKLQITSVPTLHFFQNGKKADELIGADVARLNHITEKLFKFAFQLHFYVWQTPTISKDPHGSRLTKPLTLVAAEQPSIRPLINLLKACEESGSLKQANCIHGHVLKSGCGDKDLLVFLNHATHVYSKCMEYEAARKVFDSMSQRNVFSSTVMIVASNEHGYYHDGVELFCMMLEQGELLDGFAFSAVLQSCVGLESIELGEVVHAQVVRGFLTHTVIGTSLLNLYAKLGKSESSIKVFNTMTELNVVSWNAMISGFASNGLHLQAFHCFINMIEAGVTPNSSTFISVAKAAGKLGDINKCHEVYRYASECGLHCNTSVGTALIDMYSKCGALSDAQVLFDSRFNGCLVNTPWNAMITDVYTFCCVFNSIAALKCLKSLKETHRMALKCGFDLMKISASNSLADAYAKCESLEAGEKVFNRMEEKDIVSWTTMVAAYCQYTEWGKALAIFSQMRNEGFDIVS. 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05437 598 Pfam Thioredoxin 70 165 IPR013766 -
Seca12g05437 598 ProSiteProfiles Thioredoxin domain profile. 60 181 IPR013766 -
Seca12g05437 598 NCBIfam pentatricopeptide repeat 564 594 IPR002885 -
Seca12g05437 598 NCBIfam pentatricopeptide repeat 384 417 IPR002885 -
Seca12g05437 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Seca12g05437 598 SUPERFAMILY Thioredoxin-like 63 164 IPR036249 -
Seca12g05437 598 Gene3D Glutaredoxin 65 177 - -
Seca12g05437 598 Pfam PPR repeat 564 594 IPR002885 -
Seca12g05437 598 Pfam PPR repeat 287 313 IPR002885 -
Seca12g05437 598 Pfam PPR repeat 260 283 IPR002885 -
Seca12g05437 598 Pfam PPR repeat 536 563 IPR002885 -
Seca12g05437 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Seca12g05437 598 Gene3D Tetratricopeptide repeat domain 209 335 IPR011990 GO:0005515
Seca12g05437 598 Gene3D Tetratricopeptide repeat domain 506 597 IPR011990 GO:0005515
Seca12g05437 598 PANTHER OS07G0578800 PROTEIN-RELATED 495 590 IPR045215 GO:0003723|GO:0009451
Seca12g05437 598 Pfam PPR repeat family 382 427 IPR002885 -
Seca12g05437 598 FunFam Thioredoxin 66 177 - -
Seca12g05437 598 CDD TRX_family 76 164 - -
Seca12g05437 598 Gene3D Tetratricopeptide repeat domain 336 483 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05437 Seca-Chr12 145030079 145037177 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05437 12 145030079 145037177 Seca12g05437 12 145030079 145037177 ECH