Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04762 ATGAATGAACAACCTCAGCCCCCACCACAACAACCTATGCAAAACAAGAGATGCCCACATTGCGATTCCCTGGATACCAAGTTCTGCTATTACAACAATTATAGCCTGTTGCAACCTCGACATTTTTGCAAAGCGTGTAAAAGGAATTGGACACAAGGTGGAACTTTAAGGAACAGACCAGTTGGTGGTAATTCCCGCAAGGGAAAGCGTGCCAAAAGTTCTTTTTCATCTTCCCGGCCACAACCACAACCACTGCCTCAAGAAGTGGTTCATGTTCAAAACCATCCAAATATGACACCATTGATTAGGCCTGTAAGGCCTTCTCTACCCATGGTGGTTCACTCAACCAGCCCCTATTATCAAGGTGGTGGTGGGTATTTATCTTCTCTTTCAAATATTCAGTCACCAAACCCAACACAACCTTTCAATCAGTCTCTGAATGGTAATGTTGTGGGTTCTTCTAATTTGTCTCCTCCATCTAGCTTCAACTCTGGTTCTCTGGGCTCACAAAATCACCACACGGGCGAAATTCAACCTTCACAATTCTATCAGATGGAAAATAGAAGTGGGATAGGATCTCTGTATCATGCAGGACAAGGTTTGATTCCATCAAGTGTGACTAATAATAGTACTGCTCTTCACCCTGATCATAGAGCGTCTAACACCTCTTTTTGGAGTACTATGAGAACCACTTCCATTAGTGGTAACTTTGATCAGAACAATATCAGAGGTGCTTCTTCTTCCCTGATACCAAATCATTGGCCTAATCATCTTGGGTATGGCCCAACTCATTAA 795 0.4302 MNEQPQPPPQQPMQNKRCPHCDSLDTKFCYYNNYSLLQPRHFCKACKRNWTQGGTLRNRPVGGNSRKGKRAKSSFSSSRPQPQPLPQEVVHVQNHPNMTPLIRPVRPSLPMVVHSTSPYYQGGGGYLSSLSNIQSPNPTQPFNQSLNGNVVGSSNLSPPSSFNSGSLGSQNHHTGEIQPSQFYQMENRSGIGSLYHAGQGLIPSSVTNNSTALHPDHRASNTSFWSTMRTTSISGNFDQNNIRGASSSLIPNHWPNHLGYGPTH. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04762 264 ProSitePatterns Zinc finger Dof-type signature. 18 54 IPR003851 GO:0003677|GO:0006355
Seca12g04762 264 MobiDBLite consensus disorder prediction 69 85 - -
Seca12g04762 264 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 199 IPR045174 GO:0003700|GO:0006355
Seca12g04762 264 MobiDBLite consensus disorder prediction 53 85 - -
Seca12g04762 264 ProSiteProfiles Zinc finger Dof-type profile. 16 70 IPR003851 GO:0003677|GO:0006355
Seca12g04762 264 Pfam Dof domain, zinc finger 15 70 IPR003851 GO:0003677|GO:0006355
Seca12g04762 264 MobiDBLite consensus disorder prediction 130 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04762 Seca-Chr12 130132170 130132964 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04762 9 84 C2C2-Dof Transcription Factor Family AT3G45610 61.842 1.77e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g04762 zf-Dof 2.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04762 - - lang:109349998 216.468