Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04760 ATGAATGAACAACCTCAGCCTCCACCACAACAATCTATGCAAAACCAGAGATGCCCACGTTGCGATTCCCTGGATACCAAGTTCTGCTATTACAACAATTATAGCATGTTGCAACCTCGACATTTTTGCAAAGCATGTAAAAGGTATTGGACACAAGGTGGAACTTTCAGGAACATACCGGTTGGTGGTAATTCTCGCATGGGAAAGTGTGCCAAAAGTTCTTCATCTTCCCGGCCACAGCCACAACCACTGCCTCAAGAAGTGGTTCATGTTCAAAACCATCCAAATATGACACCATTGATGAGGCTTGTAAGGCCTTCTCTACCCATGGTGGTTCACTCAACCAGCCCTTATTATCAAGTTGGTGGTGGGTATGTATCTTCTCTTTCAAATGTTCAGTCACTAAACCCAACACAACCTTTCAATCAGTCTCTGAATGGTAATGTTGTGGGTTCTTCTAATTTGTCTCTGCCATCTAGCTTCAACTCTGCTTCTCTGGGCTCCCAAAATCACCACTCGAGCGAAATTCAACCTTCACAATTCTATCAGATGGAAAATAGAAGTGGGATAGGATCTCTGTATCATGCAGGACCAGGTTTGATTCCATCAAGTATGACTAATAATAGTACTGCTCTTCACCCTGATCATAGAGCGTCTAACACCTCTTTGTGGAGTACAATGAGAACCACTTCCATTTGTGGTAACTTTGATCAGAACAATATCAGAGGTGCTTCTTCTTCCTTGATACCAAATCATTGGCCTAATCATCCTGGGTATGGCCCAACTCAGTAA 792 0.4306 MNEQPQPPPQQSMQNQRCPRCDSLDTKFCYYNNYSMLQPRHFCKACKRYWTQGGTFRNIPVGGNSRMGKCAKSSSSSRPQPQPLPQEVVHVQNHPNMTPLMRLVRPSLPMVVHSTSPYYQVGGGYVSSLSNVQSLNPTQPFNQSLNGNVVGSSNLSLPSSFNSASLGSQNHHSSEIQPSQFYQMENRSGIGSLYHAGPGLIPSSMTNNSTALHPDHRASNTSLWSTMRTTSICGNFDQNNIRGASSSLIPNHWPNHPGYGPTQ. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04760 263 ProSiteProfiles Zinc finger Dof-type profile. 16 70 IPR003851 GO:0003677|GO:0006355
Seca12g04760 263 ProSitePatterns Zinc finger Dof-type signature. 18 54 IPR003851 GO:0003677|GO:0006355
Seca12g04760 263 MobiDBLite consensus disorder prediction 61 84 - -
Seca12g04760 263 MobiDBLite consensus disorder prediction 68 84 - -
Seca12g04760 263 Pfam Dof domain, zinc finger 15 69 IPR003851 GO:0003677|GO:0006355
Seca12g04760 263 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 184 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04760 Seca-Chr12 130112410 130113201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04760 4 87 C2C2-Dof Transcription Factor Family AT5G60200 58.140 2.84e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g04760 zf-Dof 4.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04760 - - lang:109349998 240.736