Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04062 ATGTCAGAGGTTAAAGACCCGGCGATAAAGCTTTTTGGGAGGACAATTTCGCTTCCTCTCATCCCCAATCACTCTTCTCCTCTCACTCGTCCTCCATCTTCCTCTTCTCCTTGCCAAGTGAGTTCTGAAACAGAGGAACCATCAAGGAAAGAACTCACCTCAGTAGTACAAGATGATGGTGCCTCACAACAAACCACAGAGGATGTAAAGTCTCCAACAACATCTTCAGGCATAAGTGAGAATGCTAAGACTCCCTCAGCTGAGACAGAGACTTCATTACTGAAATCCTCTACAAATGGAGAACAAAGTGAGACTACTAGTGTTTCTGAAGAAAAAACTCCAAAGAAACCAGACAAGATACTTCCATGTCCGCGATGCCATAGCATGGACACCAAATTCTGTTATTATAACAACTACAATGTCAATCAGCCTCGTCATTTCTGCAAGAACTGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAATGTGCCTATAGGTGCTGGTCGCCGCAAGAACAAGAACTCTTCTTCCTCACATTATCGCCACATGATGGTTCCAGAGGCACTTCAAGGAGCTAAACTCAATGCCCCTAATGCTGTTATGGGAAATGGAGCAGCTGTCTTGACCTTTGGTTCAGAACCTCCACTTTGTGATAGCATGGCTTCTGTACTAAACATTGCTGAGAGAACACAAAACTGTGTCCCAAATGGGTTTAATGCAACTGAGCCAAATAATTTTGTTTCCTATGGTAAGGAAGATGATCACTCTAGTGGAGTTTCTGTTACAACTTCAACCTCATCAGAGAGACAAGGCCCTACTGGCTCACATGATAAAAGAATTGAAGGTTTCCCTCCTCAATTGCAATACTTCCCAAGTTCCTCATGGCCTTATGCATGGAATTCAGCACAGTGGAATTCTTCAATGCCTCCTCCAGCTCCTGCATTTTGCCCACCAGGTTATCCTTTATCATTCTATACCACACCTGCATATTGGGGTTGTGTGCCAGGGCCACCACCCTCCTGGAATATGTCATGTATCTCACCTCAATCTTCTGCTCATGGTTCTGTCCCTAATGCACCTACTTTGGGGAAACACTCAAGGGATGGGAACATCATCACCCCAACCAACTCACAGAAAGAAAAGGCTGAAACAGAACATAACAGTGCAGAAAACAACATCTTGATCCCCAAGACTCTTAGAATTGATGATGATTCTAGTGAAGCAGCAAAGAGTTCCATGTGGTCAAAAGTAGGGATGAAGAATGACAAGGGAAATTCTGTTAATGGAGGAGGCCTTTTCCAAGCATTTCCATCCAAGGGAAATGACAAAAATCACATGGTTGAAGCATCACCAATGTTACATGCCAATCCTGCAGCTTTATCAAGGTCTCTCACCTTCCATGAGCAGACCTAA 1416 0.4393 MSEVKDPAIKLFGRTISLPLIPNHSSPLTRPPSSSSPCQVSSETEEPSRKELTSVVQDDGASQQTTEDVKSPTTSSGISENAKTPSAETETSLLKSSTNGEQSETTSVSEEKTPKKPDKILPCPRCHSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKNSSSSHYRHMMVPEALQGAKLNAPNAVMGNGAAVLTFGSEPPLCDSMASVLNIAERTQNCVPNGFNATEPNNFVSYGKEDDHSSGVSVTTSTSSERQGPTGSHDKRIEGFPPQLQYFPSSSWPYAWNSAQWNSSMPPPAPAFCPPGYPLSFYTTPAYWGCVPGPPPSWNMSCISPQSSAHGSVPNAPTLGKHSRDGNIITPTNSQKEKAETEHNSAENNILIPKTLRIDDDSSEAAKSSMWSKVGMKNDKGNSVNGGGLFQAFPSKGNDKNHMVEASPMLHANPAALSRSLTFHEQT. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04062 471 MobiDBLite consensus disorder prediction 353 389 - -
Seca12g04062 471 MobiDBLite consensus disorder prediction 256 272 - -
Seca12g04062 471 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
Seca12g04062 471 MobiDBLite consensus disorder prediction 15 121 - -
Seca12g04062 471 MobiDBLite consensus disorder prediction 55 107 - -
Seca12g04062 471 MobiDBLite consensus disorder prediction 251 283 - -
Seca12g04062 471 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
Seca12g04062 471 MobiDBLite consensus disorder prediction 19 43 - -
Seca12g04062 471 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
Seca12g04062 471 PANTHER CYCLIC DOF FACTOR 2 1 470 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04062 Seca-Chr12 109074377 109078501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04062 4 469 C2C2-Dof Transcription Factor Family AT5G39660 40.316 2.39e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g04062 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04062 - - gmx:100813315 626.32