Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03530 ATGACGCCACCAAATCACATCCTAGCAAAAACGAAAGACCAAGAAAACCAAGGAGGTGGTTCCGATACCCAGAAAACAACAAAAGCAGCAGAGCAAGGCCTAAAATGCCCAAGATGCGACTCTGCTAACACCAAATTCTGTTACTACAACAACTACAGTCTCAGCCAGCCACGGCATTTCTGCAAGACTTGCAGAAGGTACTGGACAAACGGTGGAGCGTTGCGGAACGTTCCAATTGGTGGTGGTTGCAGGAAGAACAAGAAGGTGAAAACGACGTCGTCTTCATCCTCATCATTATCAAGGCTCTCCTATGATTCCAAAGACTCTGCTTCCTCTTCTTCAGAGCTTGCTGGCCTCAGATTCTTCCACATGAACAACTCACCTTCACTGGATTTTCACCTTGGTGGTTCTGGTTCTGGATTACCCTTCCCTTCAAGGCTTCAATATCATCATTTTCACCCTCCATCAACCACTGCTACCTATAACCAGAACCAGTTCTCTTCTTTTGGGGCTGTTTCTGCAGCAAATGCTTCAAGTTTCCAACTTGATAACTCTGTTGCATCAGATTCTTTAATGGGTCTAAACTATCCATTTTCAGCTGGAAGTGGATTCAACGGTGCAACCGCAATCCAAGGCGTGAACTCGTTGAATGTTAACAGTAGTCTTGCTAGTTCAATTGAGTCATTGAGCTCTATCAACCAGGACTTGCACTGGAAGCTTCAGCAGCAGCGATTGGCAATGGTGTTCGGTGGAGATACCCAGAAAGATAACAATAATGGTGGAAGCGTTTCAGTTTCTCAGGTTGTTAACCTTGAGAACCAGACCCAGAAACCGCAACCCATTTTGTTTCAGAGCCTTGAGAATCCCAAGACAGCAGAGATTTTTCAAGCCAGAAAAGAAGATCAACCAACTGAATGGTTCTTTGCTCCTACAACAACCAGTAATGGCCATGATAATGCAATTGCAAACAACAACAACAGCAACTGGAGTAATGGTGTTAATGTTTGGGGTGATGTGCAGCAACAATATAGCACTATGCCCTAG 1044 0.4473 MTPPNHILAKTKDQENQGGGSDTQKTTKAAEQGLKCPRCDSANTKFCYYNNYSLSQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKTTSSSSSSLSRLSYDSKDSASSSSELAGLRFFHMNNSPSLDFHLGGSGSGLPFPSRLQYHHFHPPSTTATYNQNQFSSFGAVSAANASSFQLDNSVASDSLMGLNYPFSAGSGFNGATAIQGVNSLNVNSSLASSIESLSSINQDLHWKLQQQRLAMVFGGDTQKDNNNGGSVSVSQVVNLENQTQKPQPILFQSLENPKTAEIFQARKEDQPTEWFFAPTTTSNGHDNAIANNNNSNWSNGVNVWGDVQQQYSTMP. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03530 347 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g03530 347 MobiDBLite consensus disorder prediction 7 26 - -
Seca12g03530 347 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Seca12g03530 347 MobiDBLite consensus disorder prediction 79 109 - -
Seca12g03530 347 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 246 IPR045174 GO:0003700|GO:0006355
Seca12g03530 347 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Seca12g03530 347 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Seca12g03530 347 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03530 Seca-Chr12 81089115 81090158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03530 19 347 C2C2-Dof Transcription Factor Family AT5G65590 36.313 2.18e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g03530 zf-Dof 5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03530 - - gmx:100780729 311.997