Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02813 ATGGCGGGGTTATTCTCATTAGGAGGAGGAGGGAGAGGGAACCAAGAAGGTGAACACCACCAGAACAACAACGAGATTCCTCCTCCAGAGACGCTATTCTGGTACAACAAAAACGACGACGTTTCCTCTTACCGAGGGTTAGAGCTATGGAACCAGCAACAGCAAGAAGCGGAGCAAGTGATAGCGCATGCGCGGCCTCTCCTCCACCGAGATCTCTACTCTTTAGGTGTGGGCCCCAGCAGAGTGTCCTCCGATGACCAGTCGTCGTCGAGATCGGCCTTCATGGCGATGAGGTCAGCCGTAGAAAGCGGCGGAGGAAGCGGAGGAGGGATAAGCTGCCAAGACTGTGGGAACCAAGCGAAGAAAGATTGCCCTCACATGCGGTGCAGAACTTGCTGCAAGAGCCGCGGTTATGAGTGCCAAACACATGTGAAAAGCACTTGGGTTCCCGCTTCAAAACGCCGCGAACGACAACAACAACTCGCAGCTTTGCACAGAGACATTTCCAAAAGGCCGAGAGATACTAATAACCCAACCACCAATACTTGTTCCACTCGTAATTTGCCCTCAGGGTTAGAGCAAGGACATTTTCCTTCTGTGGTGAGTTCTCCAGCGGAGTTCAGATGCGTGAGGGTTAGCTGCGTTGAGGACGCTGATGACAGGTACGCATATCAAACGGCTGTGAACATTGGAGGGCATGTCTTCAAAGGAATCCTCTATGACTATGGTCCAGACAATAATAACAATAATAATAATATCAATAATAATAATAATAATTATATGACTGGTGAGACCTCCTCCACCGCTATTGCCGGAACTCAACCGTTAAACCTCATCGCTGCCTCCGCTGGAGCTGTTGTCTCATCTTCTGGGGCACTTGTTGATCCTTCTTCCATGTATTCAGCTCCAGTTAACACCTTCATGGCTCCTAGTGGTACGCAATTCTTCCCTCGTCCAAGATCTTGA 966 0.499 MAGLFSLGGGGRGNQEGEHHQNNNEIPPPETLFWYNKNDDVSSYRGLELWNQQQQEAEQVIAHARPLLHRDLYSLGVGPSRVSSDDQSSSRSAFMAMRSAVESGGGSGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALHRDISKRPRDTNNPTTNTCSTRNLPSGLEQGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHVFKGILYDYGPDNNNNNNNINNNNNNYMTGETSSTAIAGTQPLNLIAASAGAVVSSSGALVDPSSMYSAPVNTFMAPSGTQFFPRPRS. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02813 321 NCBIfam putative zinc finger domain, LRP1 type 112 154 IPR006510 -
Seca12g02813 321 Pfam Domain of unknown function (DUF702) 110 245 - -
Seca12g02813 321 NCBIfam LRP1 C-terminal domain 196 244 IPR006511 -
Seca12g02813 321 MobiDBLite consensus disorder prediction 1 30 - -
Seca12g02813 321 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 305 IPR007818 GO:0003700|GO:0006355
Seca12g02813 321 MobiDBLite consensus disorder prediction 165 196 - -
Seca12g02813 321 MobiDBLite consensus disorder prediction 174 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02813 Seca-Chr12 50661175 50664320 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca12g02813 DUF702 3e-59 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00491 4 8008152 8009898 Seca12g02813 12 50661175 50664320 ECH
Seca6g00861 6 29431715 29433386 Seca12g02813 12 50661175 50664320 ECH
Seca12g02813 12 50661175 50664320 Seca12g02813 12 50661175 50664320 ECH
Seca4g00156 4 2387953 2388903 Seca12g02813 12 50661175 50664320 ECH