Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g02374 | ATGAAGAAGATGGCTCTCAGAGATGAAGATGCGCAACACCACTCTCCTTCATTCCTTGATGCCCTTCTCTGTGAAGAGCAAGATACCTTTGAAGAAGATCTTGATGATGCAAACGGTTCTGAGGTTGAGACCAATACCCATGACCCTTCTGCTAGAAAGTTGCAATCTTTGCCCTTGGTTTTGCTGGACAATGACGTGTTCTGGGAAGATGATGAGCTTGTCTCCTTAATCTCAAAAGAGGGAGAAGAAACCCATTTGTCTGCTCGTAATCTCATTGCTGATGGACCCTTAGAAGGACCTCGTGTTGAGGCTGTGACCTGGATTTCTAAAGTTTGTGCTCACTATGGCTTCTCTGCTTTGACAACTGTTCTTGCTGTTAACTACTTTGATAGGTTCATCACAAGCCTCACGTTTCAGAGGGATAAGCCATGGATGACACAGCTCACTGCTGTTGCTTGTTTGTCCCTTGCTGCCAAAGTGGAAGAGACTCATGTGCCACTTCTTTTAGACCTGCAAGTGGAGGAATCAAGATTTGTGTTTGAAGCAAAGACTATACAGAGAATGGAGCTTCTAGTATTGTCGACTCTTAAATGGAAGATGCATCCTGTGACCCCAATTTCCTTCTTTGAACACATTGTTAGAAGGCTTGGTTTAAAGAGTCGCTTGCATTGGGAGTTCCTTTGGCGTTGTGAGAGAGTTCTTCTCAATGTCATTGCGGCAGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCCATGTTATTAAAGAGATTGAGCCATTTAATGCAACTGAGTACATTGATCAACTTCTCAGTTTACTGAAGATTAGCGAGGAACAACTGAACAAGTGCTACAAACTCATACTGAAACTAGTAGTTTGCCATGAAGGCATTTACAATCTTAACCAGAAACGCAAGCGCCTATCTGAACCAAGTAGCCCAGGTGGTGTCATAGATGCATCTTTTAGTTGTGACAGCTCAAATGATTCATGGACTATGGCATCACCATTCTCACTTCCACCGGAGCCACTGCTTAAGAGGAGAAGAGCTCAGGACCAGCAGATGCGGTTGCCTTTGGTTAATCGTGTGTCCATTGATGTTCTTAATAGCCCTTGTTAA | 1137 | 0.4354 | MKKMALRDEDAQHHSPSFLDALLCEEQDTFEEDLDDANGSEVETNTHDPSARKLQSLPLVLLDNDVFWEDDELVSLISKEGEETHLSARNLIADGPLEGPRVEAVTWISKVCAHYGFSALTTVLAVNYFDRFITSLTFQRDKPWMTQLTAVACLSLAAKVEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWKMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVIAADSRVMSYLPSTLAAATMIHVIKEIEPFNATEYIDQLLSLLKISEEQLNKCYKLILKLVVCHEGIYNLNQKRKRLSEPSSPGGVIDASFSCDSSNDSWTMASPFSLPPEPLLKRRRAQDQQMRLPLVNRVSIDVLNSPC. | 379 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g02374 | 378 | FunFam | D3-type cyclin | 94 | 201 | - | - | |
| Seca12g02374 | 378 | FunFam | CYCLIN D32 | 202 | 292 | - | - | |
| Seca12g02374 | 378 | MobiDBLite | consensus disorder prediction | 30 | 49 | - | - | |
| Seca12g02374 | 378 | Gene3D | - | 101 | 201 | - | - | |
| Seca12g02374 | 378 | Pfam | Cyclin, N-terminal domain | 99 | 200 | IPR006671 | - | |
| Seca12g02374 | 378 | SMART | cyclin_7 | 106 | 194 | IPR013763 | - | |
| Seca12g02374 | 378 | CDD | CYCLIN_AtCycD-like_rpt1 | 101 | 198 | - | - | |
| Seca12g02374 | 378 | SUPERFAMILY | Cyclin-like | 185 | 302 | IPR036915 | - | |
| Seca12g02374 | 378 | Gene3D | - | 202 | 292 | - | - | |
| Seca12g02374 | 378 | SMART | Cyclin_C_2 | 203 | 332 | IPR004367 | - | |
| Seca12g02374 | 378 | Pfam | Cyclin, C-terminal domain | 203 | 302 | IPR004367 | - | |
| Seca12g02374 | 378 | SUPERFAMILY | Cyclin-like | 67 | 201 | IPR036915 | - | |
| Seca12g02374 | 378 | CDD | CYCLIN_AtCycD-like_rpt2 | 203 | 294 | - | - | |
| Seca12g02374 | 378 | PANTHER | CYCLINS | 75 | 299 | IPR039361 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g02374 | Seca-Chr12 | 33797319 | 33799501 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca12g02374 | 4 | 368 | Core Cell Cycle Gene Families | AT5G67260 | 52.674 | 5.02e-117 | 344 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca12g02374 | 12 | 33797319 | 33799501 | Seca12g02374 | 12 | 33797319 | 33799501 | ECH | |
| Seca4g01431 | 4 | 23082903 | 23084940 | Seca12g02374 | 12 | 33797319 | 33799501 | ECH | |
| Seca12g02374 | 12 | 33797319 | 33799501 | Seca8g07764 | 8 | 174896434 | 174899264 | PCT | |
| Seca12g02374 | 12 | 33797319 | 33799501 | Seca12g02374 | 12 | 33797319 | 33799501 | PCT |