Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01371 ATGCACCAAACTACAGATCCTGCAATTAGGCTCTTCGGTCAGAAGATTCCTCTGCCCGCTGATCCTCACCTTCCCGCCGTTTCCGCCGCCGCTTCTCACTCGCCGCCGGACATCCATCTCCACAAACAAGAAGAAGAAGAAGAAAACAGAGAAAGTGGTGATGAAACAGAACAAGAGCCACAAGATGAGGATCTTCCAGGAGCTGAAGATGTAACAGAGGAAGAGGAAGAAGCTGATCCTGATGATACCCCTTCAAATGCAGAAGAGGAGTCTAACAATTCAGGCATGTCCCCTGAGGCTATTGTGAACCCAAAAACACCTTCCATACAAGAAGAAACCAAAAGTGACAAGTCAGAGAAGGATCAAAGCAATGCAGGGAACTCACAAGAGAAAACCCTGAAGAAACCAGATAAAGTACTACCATGTCCCCGCTGCAATAGCATGGACACTAAATTCTGTTACTATAACAACTACAACATCAACCAGCCACGTTATTTCTGCAAAGCTTGCCAAAGATATTGGACTGCTGGTGGCACCATGAGGAATGTTCCAGTAGGTGCAGGACGAAGAAAGAACAAGAACTCCACCTCACATTATCGCCACATCACTATCTCTGAGGCTCTTCAAGCAGCTAGAATAGATGCTCCTCCTAATGGAACTCATCTTCCTACATTGAAAACCAATGGTAGAGTCCTCAGCTTTGGATTAGATGCACCTATTTGTGATTCCATGACATCTGTTCTCAATCTTGGTGAGAAAAAAGTTCTTAATGGCACAAGAAATGGGTTTCATGTTTCTTGCAAGAGTGGGGAAAATGGTGATGACTCATCAAATTCAAGTTCAACATCTTCTATTACTGTTTCAAGTTCCATGGGAGAAAGTAGCAAAAGTACTTTCCAACAACCAATGGTTCAAAATAATGGTTTCATTCCTCAAGTTCCATGCATTCCTAGTGTTCCTTGGCCTTATACTTGGAACCCTCCAGTTCCTTCACCTGCTTTGTGTCCTTCAGGATTTCCCTTGCCATTCTATCCTGCTCCTGCTTTTTGGAACTGCAGTGTTCCATGGTTTCCCTCACATTCCCCTGCTTCAACCCCAAAGTCTCCAATCTCAGGTCCAAATTCTCCAACTTTGGGAAAGCACTCAAGGGAAGGTGAGGTGATCACACAGGAACCTTTGCAAAAAGAAGAACCATCACCAAAGCAAAGGAATGGCTGTGTTTTGGTTCCCAAAACATTAAGAATTGATGACCCAAGTGAAGCTGCTAAGAGTTCTATATGGGCAACACTAGGAATAAAAAATGAATCAGTCAATGGGGGAGGTATGTTTAAGGCCTTCCAATCAACAAAGGAGGAAAAGAACCATGTAGAAGCTTCTCCAGTGTTGAGGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAATTTTCATGAGAACTCCTAA 1440 0.4389 MHQTTDPAIRLFGQKIPLPADPHLPAVSAAASHSPPDIHLHKQEEEEENRESGDETEQEPQDEDLPGAEDVTEEEEEADPDDTPSNAEEESNNSGMSPEAIVNPKTPSIQEETKSDKSEKDQSNAGNSQEKTLKKPDKVLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITISEALQAARIDAPPNGTHLPTLKTNGRVLSFGLDAPICDSMTSVLNLGEKKVLNGTRNGFHVSCKSGENGDDSSNSSSTSSITVSSSMGESSKSTFQQPMVQNNGFIPQVPCIPSVPWPYTWNPPVPSPALCPSGFPLPFYPAPAFWNCSVPWFPSHSPASTPKSPISGPNSPTLGKHSREGEVITQEPLQKEEPSPKQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESVNGGGMFKAFQSTKEEKNHVEASPVLRANPAALSRSLNFHENS. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01371 479 ProSitePatterns Zinc finger Dof-type signature. 142 178 IPR003851 GO:0003677|GO:0006355
Seca12g01371 479 MobiDBLite consensus disorder prediction 49 86 - -
Seca12g01371 479 Pfam Dof domain, zinc finger 137 194 IPR003851 GO:0003677|GO:0006355
Seca12g01371 479 MobiDBLite consensus disorder prediction 361 378 - -
Seca12g01371 479 MobiDBLite consensus disorder prediction 267 299 - -
Seca12g01371 479 ProSiteProfiles Zinc finger Dof-type profile. 140 194 IPR003851 GO:0003677|GO:0006355
Seca12g01371 479 MobiDBLite consensus disorder prediction 1 140 - -
Seca12g01371 479 PANTHER CYCLIC DOF FACTOR 2 4 479 IPR045174 GO:0003700|GO:0006355
Seca12g01371 479 MobiDBLite consensus disorder prediction 110 124 - -
Seca12g01371 479 MobiDBLite consensus disorder prediction 361 384 - -
Seca12g01371 479 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01371 Seca-Chr12 13668490 13671083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01371 1 477 C2C2-Dof Transcription Factor Family AT3G47500 47.262 9.74e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g01371 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01371 - - gmx:778113 643.654