Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01216 ATGTATTCCTCTCTCAACTCCTACCCTAACCAAACATTCTTCTCTACTTCTAGGCCTTTTTCTTTTGAAAGCAACCCTTCTTCAAAAGATATTGAAACCAATTATTGTTCTCCTCTTCCTCCTCTTCCTCTTCCACCTCCTTTGTCCTTTTTTCAATTCCCTTTTTCTCCCTTTGAAGACAACAACAACAATAACCACAATGAAATCTTCAACCACCTTGAACCACCACAACAACAACATGATTTGTTACTTCATCAATCTCTACCTCATCCTGAAGCTGTTATGAACATAGATGCTGCAGCTTCTGCTATGATGAACAGCAAGATTCCTGGTAAAGCTGCTACTACAGGACAAGGAACTACTGCAATGATGGAGCAGATCCCAAGAAAAAGATCTATTAAGAGAGATCGGCACAGTAAGATCAACACAGCTCGAGGACTCAGAGATCGGAGAATGAGATTGTCCCTTGAAGTTGCAAAGAGGTTTTTTGGCCTTCAAGATATGTTAGGCTTTGACAAAGCTAGCAAAACTGTTGAGTGGTTACTTAACCAAGCAAAAGTTGAAATCAAACAACTTGCTAGAGACAAGAATCAAAATAGTTGTAGCACTAGTGTTGGTGGTGCTAAGAGTGCATCTTCAACTTCAGAATGTGAAGGGGTGTCAAGCTTAGATGAGGTTGTAGTGAGTGAAATTAATCATCAAGAACAAATAGGGAAGAGGAGAATTAAGGTTTGTAGAAGAAAGAGTGCATTCAATCCTATTGGTAGAGAAAAGGCAAGGGAAAGGGCAAGAGAAAGAACAAGAGAAAAGATGATGAAGACTAAGAGATTATTAGTAGTTGATCATGATGAATCAAACTATTGGAATATTAATCAAAGTGTGAATCATCCCTCTTTGGATTTGCTTCAAGCTGAGGTTGATCAAGAGCCAAAGGAACATTCTAGAACTGTGGTAGAAGAAGATATGGCACATGAAGATTCTTTCTTGATTATGAATAAATGGAGCCCAACAACTATGATGTTTACTTCTCTTAATAACTCAGGATCAATCCTTCAAGAACCTGTAAGTTCAATTTAA 1077 0.3816 MYSSLNSYPNQTFFSTSRPFSFESNPSSKDIETNYCSPLPPLPLPPPLSFFQFPFSPFEDNNNNNHNEIFNHLEPPQQQHDLLLHQSLPHPEAVMNIDAAASAMMNSKIPGKAATTGQGTTAMMEQIPRKRSIKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLARDKNQNSCSTSVGGAKSASSTSECEGVSSLDEVVVSEINHQEQIGKRRIKVCRRKSAFNPIGREKARERARERTREKMMKTKRLLVVDHDESNYWNINQSVNHPSLDLLQAEVDQEPKEHSRTVVEEDMAHEDSFLIMNKWSPTTMMFTSLNNSGSILQEPVSSI. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01216 358 MobiDBLite consensus disorder prediction 112 136 - -
Seca12g01216 358 MobiDBLite consensus disorder prediction 195 215 - -
Seca12g01216 358 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 108 317 IPR005333 GO:0003700
Seca12g01216 358 ProSiteProfiles TCP domain profile. 134 192 IPR017887 -
Seca12g01216 358 Pfam TCP family transcription factor 134 273 IPR017887 -
Seca12g01216 358 ProSiteProfiles R domain profile. 253 270 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01216 Seca-Chr12 11920314 11921390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01216 130 305 TCP Transcription Factor Family AT3G18550 37.915 1.78e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca12g01216 TCP 5.9e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01216 12 11920314 11921390 Seca12g01216 12 11920314 11921390 ECH
Seca10g02420 10 29310693 29312771 Seca12g01216 12 11920314 11921390 ECH
Seca12g01216 12 11920314 11921390 Seca10g02420 10 29310693 29312771 ECH