Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05638 ATGGCAAAAGGGGCTGTTTGGTTATGCTCCAAACTAGTGCTATCAATCACCGTCCTCATAACAATCGGTGTGGGCTTAACAGAGGGTCAACCAGAGGCACATTTCAAGTGCACCGTAGAGAACGCCACGTGTCATGGCCTAGCCGATTACTCACACAAAAACGGCACCACACTACGCCACATCCAAACACTGTTCAACGTGAAGCACCTCCCAGACATTCTCGGCGTTAACAACCTCCCCATCAACACCACAGCCTCTTACCGTGTGGGCCCCAACCAGGCCATTAAGGTACCGTACCCTTGCAGGTGCAGCAACCAAGAGGGCCTTTCGGACCGGGTTCCGGTTTACAAAATCAAGCCAGGAGACATACTGGATGAAATAGCTACAACGGTTTTTGCGCGTTTGGTTAAATACCAGCAGATCCAAGAGGCGAATAAGGCAAAGATACCGGACGCGAATAACATAACTGCTGGGGACACGATTTGGATTCCTCTGCCGTGTAGCTGTGATCAGGTGGATGGGAGCAGTGTGGTGCACTATGCACACGTTGTGATTGCAGAGAGTACCGTTGAGGGGATTGCTCAACAGTATGGTACCACACAGGAGATTCTTCTCTCCCTTAACGACATGACTGACCCTAAATCCCTTCAGGCCGATCAGATTCTTGATGTTCCCCTCAAAGCTTGTTCCTCGAGTGTGAGGAATGACTCATTGGACTCCCCTTTGCTTGTCCCAAATGCTACTTATGTCTACACTGCTAATGAATGTGTCAAATGCAAGTGCGACTCCAGTAACAACTTTAGTGTGTTTAGGTTACAATGTGAGCCATCCCAACACAAACCAATCAATCAATGGTCTGTTTGCCCTTCAATGGAATGCTCAAAGGACGTCTTAATTGGCAACATAACCTCCACAGATTCCTGCAACCGCACAGTCTGTGACTATGCTGGTTATAACTCCAAAAATATCTCCACCATTCTTGCAACGCAGAACACTTGTGCTGCAGTACCACCGAGTCCAAGTGGTTCACCAAGTGATTCAGGTTCAGGAGCATCAAGGAGCATTGTGCATGACTGGGTTTGGAATAATCTTCTTATTGCCATTCACTTACTCCTCTTTTTTGTCTATCTTTTGTAG 1137 0.4767 MAKGAVWLCSKLVLSITVLITIGVGLTEGQPEAHFKCTVENATCHGLADYSHKNGTTLRHIQTLFNVKHLPDILGVNNLPINTTASYRVGPNQAIKVPYPCRCSNQEGLSDRVPVYKIKPGDILDEIATTVFARLVKYQQIQEANKAKIPDANNITAGDTIWIPLPCSCDQVDGSSVVHYAHVVIAESTVEGIAQQYGTTQEILLSLNDMTDPKSLQADQILDVPLKACSSSVRNDSLDSPLLVPNATYVYTANECVKCKCDSSNNFSVFRLQCEPSQHKPINQWSVCPSMECSKDVLIGNITSTDSCNRTVCDYAGYNSKNISTILATQNTCAAVPPSPSGSPSDSGSGASRSIVHDWVWNNLLIAIHLLLFFVYLL. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05638 378 Gene3D LysM domain 171 239 IPR036779 -
Seca11g05638 378 Gene3D LysM domain 114 170 IPR036779 -
Seca11g05638 378 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Seca11g05638 378 CDD LysM 182 224 IPR018392 -
Seca11g05638 378 Pfam LysM domain 182 225 IPR018392 -
Seca11g05638 378 Pfam LysM domain 116 164 IPR018392 -
Seca11g05638 378 ProSiteProfiles LysM domain profile. 114 163 IPR018392 -
Seca11g05638 378 SMART LysM_2 181 225 IPR018392 -
Seca11g05638 378 SMART LysM_2 115 164 IPR018392 -
Seca11g05638 378 SUPERFAMILY LysM domain 180 225 IPR036779 -
Seca11g05638 378 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05638 Seca-Chr11 155797179 155800090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05638 12 325 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 47.302 7.87e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05638 - - cam:101506878 475.707