Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04927 ATGGAGCAAGGAGGAGAAGGTGGAGAAGGAGAAAACATGAATGAACAACCTCAACCTCCGCCACAACAACCTATGCAAAACCAGCTGAGATGCCCACGTTGTGATTCCCTGGATACCAAGTTCTGCTATTACAACAATTATAGCCTGTTGCAACCTCGACATTTTTGCAAAGCGTGTAAAAGGTATTGGACACAAGGTGGAACTTTCAGGAACATACCGGTTGGTGGTAATTCCTGCAAGGGAAAGCGTGCCAAAAGTTCTTCTTCATCATCCCGGCCACAACCACAACCACTGCCTCAGGAAGTGGTTCATGTTCAAAACCATCCAAATATGACACCATTGATTAGGCCTGTAAGGCCTTCACTACCCATGGTGGTTCACTCAACCAGCCCCTATTATCAAGGTGGTGGTGGGTACTTATCTTCTCTTTCAACTGTTCAGTCACTAAACCCAACTCAACCTTTCAATCAGTCTCTAAATGGTAATGTTGTGGGTTCTTCTAATTTGTCTCTGCCATCTAGCTTCAATTCTGCTACTCTAGGCTCACAAAATCACCACTCGAGCGAAATTCAACCTTCACAATTCTATCATATGGAAAATAGAAGTGGGATAGGATCTATATATCATGCAGGACAAGGTTTGAATGCATCAAGTGTGACTAATAATAGTACTACTCTTCACTCTGATCATAGAGCTTCTAACACCTCTTATTGGAGTACTACGAGAACCACTTCCATTAGTGGTAACTTTGATCAGAACAATATCAAAGGTGATTCTTCTTCCTTGATACCAAATCATTGGCCTAATCATCCTGGGTGTGGCCCAACTCAATAA 834 0.4269 MEQGGEGGEGENMNEQPQPPPQQPMQNQLRCPRCDSLDTKFCYYNNYSLLQPRHFCKACKRYWTQGGTFRNIPVGGNSCKGKRAKSSSSSSRPQPQPLPQEVVHVQNHPNMTPLIRPVRPSLPMVVHSTSPYYQGGGGYLSSLSTVQSLNPTQPFNQSLNGNVVGSSNLSLPSSFNSATLGSQNHHSSEIQPSQFYHMENRSGIGSIYHAGQGLNASSVTNNSTTLHSDHRASNTSYWSTTRTTSISGNFDQNNIKGDSSSLIPNHWPNHPGCGPTQ. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04927 277 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 227 IPR045174 GO:0003700|GO:0006355
Seca11g04927 277 MobiDBLite consensus disorder prediction 74 98 - -
Seca11g04927 277 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Seca11g04927 277 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Seca11g04927 277 MobiDBLite consensus disorder prediction 81 98 - -
Seca11g04927 277 MobiDBLite consensus disorder prediction 1 30 - -
Seca11g04927 277 MobiDBLite consensus disorder prediction 257 277 - -
Seca11g04927 277 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04927 Seca-Chr11 140578742 140579575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04927 14 97 C2C2-Dof Transcription Factor Family AT5G60200 60.440 1.23e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g04927 zf-Dof 5.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04927 - - lang:109349998 240.736