Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04925 ATGGAGCAAGGAGGAGAAGGTGAAGGAGGAAACATGAATAAACAACCTCAGCCTCCACCACAACAACCTATGCAAAACCAGAGATGCCCACGTTGCGATTCCCTGGATACCAAGTTCTGCTATTACAACAATTATAGCTTGTTGCAACCTCGACATTTTTGCAAAGCGTGTAAAAGGTATTGGACACAAGGTGGAACTTTTAGGAACATACCGGTTGGTGGTAATTCCCGCAAGGGAAAGCGTGCCAAAATTTCTTCTTCATCTTCCCGGCCACAGCCACAACCACTGCCTCAGGAAGTGGTTCATGTTCAAAACCATCCAAATATGACACCATTGATGAGGCATGTAAGGCCTTCTTTACCGATGGTGGTTCACTCAACCAACCCTTATTATCAAGGTGGTGGTGGGTATTTATCTTCTCTTTCAAATGTTCAGTCACTAAACCCAACACAACCTTTCAATCAGTCTCTGAATGGTAATGTTGTGGGTTCTTCTAATTGTTCTCTGCCATATAGCTTCAACTCTGCTTCTCTGGGCTCACAAAATCACCACTCGAGCCAAATTCAACCTTCACAATTCTATCAGATGGAAAATAGAAGTGGGATAGGATCTTTGTATCATGCAGGAGAAGGTTTGATTCCATCAAGTGTGACTAATAATAGTACTGCTCTTCACCCTGATCATAGAGCTTCTAACACCTCTTTGTGGAGTACTATGAGAACCACTTCCATTAGTGGTAACTTTGATCAGAACAATATCAGAGGTGATTCTTCTTCCTTGATACCAAATCATTGGCCTAATCATCCTGGGTATGGCCCAACTCAGTAA 828 0.4275 MEQGGEGEGGNMNKQPQPPPQQPMQNQRCPRCDSLDTKFCYYNNYSLLQPRHFCKACKRYWTQGGTFRNIPVGGNSRKGKRAKISSSSSRPQPQPLPQEVVHVQNHPNMTPLMRHVRPSLPMVVHSTNPYYQGGGGYLSSLSNVQSLNPTQPFNQSLNGNVVGSSNCSLPYSFNSASLGSQNHHSSQIQPSQFYQMENRSGIGSLYHAGEGLIPSSVTNNSTALHPDHRASNTSLWSTMRTTSISGNFDQNNIRGDSSSLIPNHWPNHPGYGPTQ. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04925 275 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
Seca11g04925 275 MobiDBLite consensus disorder prediction 80 97 - -
Seca11g04925 275 Pfam Dof domain, zinc finger 26 81 IPR003851 GO:0003677|GO:0006355
Seca11g04925 275 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Seca11g04925 275 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 210 IPR045174 GO:0003700|GO:0006355
Seca11g04925 275 MobiDBLite consensus disorder prediction 1 29 - -
Seca11g04925 275 MobiDBLite consensus disorder prediction 252 275 - -
Seca11g04925 275 MobiDBLite consensus disorder prediction 69 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04925 Seca-Chr11 140477765 140478592 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04925 11 99 C2C2-Dof Transcription Factor Family AT5G60200 57.895 2.35e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g04925 zf-Dof 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04925 - - lang:109349998 249.595