Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04166 ATGGACACCAAATTCTGTTACTATAACAACTACAATGTCAATCAGCCTCGTCATTTCTGCAAGAACTGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAATGTGCCTATAGGTGCTGGTCGCCGCAAGAACAAGAACTCTTCTTCCTCACATTATCACCACATGATGGTTCCGGAGGCACTTCAAGGAGCTAAACTCAATGCTCCTAATGCTGTTATGGGAAATGGAGCTGCTGTCTTGACCTTTGGTTCAGATCCTCCACTTTGTGATAGCATGGCTTCTGTACTGAACATTGCTGAGAGAACACAAAATTGTGTCCCAAATGGGTTTCATGCAACTGAGCCAAATAATTTTGTTTCCTATGGTAAGGAAGATGATCACTCTAGTGGAGTTTCTGTTACAACTTCAACTTCATCTGAGAGACAAGGCCTTAGTGGCTCACATGATAAAAGAATTGAAGGTTTCCCTCCTCAATTGCAATACTTCCCAAGTTCCTCATGGCCTTATGCATGGAATTCAGCACAGTGGAATTCTTCAATGCCTCCTCCAGCTCCTGCATTTTGCCCACCAGGTTATCCTTTATCATTCTATACCACACCTGCATATTGGGGTTGTGTGCCAGGGCCACCACCCTCCTGGAATATGTCATGTATCTCACCTCAATCTTCTACTCATGGTTCTGTCCCTAATGCACCTACTTTGGGGAAACACTCAAGGGATGGGAACATCATCACCCCAACGAACTCACAGAATGAAAAGGCTGAAACAGAACATAACAGTGCAGAAAACAACATCTTGATCCCCAAGACTCTTAGAATTGATGATGATTCTAGTGAAGCAGCAAAGAGTTCCATGTGGTCAAAAGTAGGGATGAAGAATGACAAGGGAAGTTCTGTTAATGGAGGAGGCCTTTTCCAAGCATTTCCATCCAAGGGAAATGACAAGAATCACATGGTTGAAGCATCACCAATGTTACATGCCAATCCTGCAGCTTTATCAAGGTCTCTCACCTTCCATGAGCAGACCTAA 1032 0.437 MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKNSSSSHYHHMMVPEALQGAKLNAPNAVMGNGAAVLTFGSDPPLCDSMASVLNIAERTQNCVPNGFHATEPNNFVSYGKEDDHSSGVSVTTSTSSERQGLSGSHDKRIEGFPPQLQYFPSSSWPYAWNSAQWNSSMPPPAPAFCPPGYPLSFYTTPAYWGCVPGPPPSWNMSCISPQSSTHGSVPNAPTLGKHSRDGNIITPTNSQNEKAETEHNSAENNILIPKTLRIDDDSSEAAKSSMWSKVGMKNDKGSSVNGGGLFQAFPSKGNDKNHMVEASPMLHANPAALSRSLTFHEQT. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04166 343 Pfam Dof domain, zinc finger 1 47 IPR003851 GO:0003677|GO:0006355
Seca11g04166 343 ProSiteProfiles Zinc finger Dof-type profile. 1 47 IPR003851 GO:0003677|GO:0006355
Seca11g04166 343 MobiDBLite consensus disorder prediction 128 144 - -
Seca11g04166 343 MobiDBLite consensus disorder prediction 123 153 - -
Seca11g04166 343 MobiDBLite consensus disorder prediction 225 260 - -
Seca11g04166 343 PANTHER CYCLIC DOF FACTOR 2 1 342 IPR045174 GO:0003700|GO:0006355
Seca11g04166 343 MobiDBLite consensus disorder prediction 241 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04166 Seca-Chr11 116815000 116818996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04166 1 341 C2C2-Dof Transcription Factor Family AT5G39660 43.553 7.81e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g04166 zf-Dof 9.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04166 - - gmx:100813315 455.292