Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04842 ATGGATCCACCACCCCTCTCCGCCGCCACCACCGCCACCATGGCTCCAACCACCATCCAACAAAACCACCCTGACTTAATAGAGACCTCATCACCAAAACCTTTTCTCAATGGTGAAACAATGAATGATGAAGCTCTCCCTGCTGTCCCTGGTGCCAAGCTTCGTCTCATGTGTAGCTATGGCGGCCACATCATGCCACGTCCTCATGACAAGTCCCTCTGTTATGTCGGCGGCGACACCCGAATCGTGGTGGTGGATCGCCATTCCTCTCTGAAAGACCTCTGTTCACGCCTTTCTTGCACTATCCTCAATGGAAGACCCTTCACTCTCAAGTATCAGTTACCCAATGAAGACCTTGATAATCTCATCACTGTTACAACTGATGAAGATCTTGATAACATGATTGAAGAGTATGATCGTATAGCAGCTGCAGCATCTCCTTTGAAACCTTCACCTTCACGCCTCAGGGTGTTTCTGTTTTTCACAAAACCAGAGTCCTCTGTTTCAATGGGGTCACTCCTTGATGATGCAAAGTCAGAGACTTGGTTCGTGGATGCACTTAACAACTCAGGGATTCTATCAAGGGGTGTGTCAGATTCTGTTGCAACTGATTGCTTTGTGAATCTTGATGGTGTTCCTGCTAGTGGTTCAAGCAATAACTTGGATGCTATGGGTGGAGCAGAGTCTTTGACTCTGCTTGAGACCAACAACAAGGTTAAGAATGTTGCTGATGTTGTGCATTCAACACCTGGTTCACCAATGTTGGAGAACAGTTCTTCTTCTTCTTCATCATCATCTCCTTCTATGGCTAATTTGCCTCCAATTCGGGTTCGTGTTGATGAAAATGGTGGTAGCAGGCTTCAGCAAGAGAAGAGGGTTGGGGTGGTGGAGGAGCAGTTTGCTCAAATGACCTTTACTTCAAGTGGGGTGAAGGCTGATGAAGGGTTTGTTGTTTCTTCTGCTGTGGCTATGCCTGCAATTCCTGCAGCTGTGACTATGGCATCAGCTGGGGTTGTTACTACTAGTGATAATGTGAATAGAGTTGTTTCTGATGATGAGAGATCAGATCATGGAGCACCTATTGGGTCTAGGAAGCCTCCTTTACCATTGCAGCTTGTGCAACCAAGGAATAGTGGTGGTTTGAGTTTGCCTTCTCCAGATTCAGTTGCTAGTGATAGTAGTATTGCATCTGCAAACTCTTTCTCCAAGACTGTTTACTATCATCAAGAACAAGTCCAAGCTGCACATTTGGACAACAAAGCTCTTGCTATGCAAAATGCAAAGAGTGAAGTATCTGATCATGTCACTGGACTACAAAGGGAACAAGTTCAGGATCCTGGTTACACATTACCCCAACAATTGGATCAAAATCAGCAACTCCAGCAGCCATATGTTCATTCCAGCACTCACTACATCCACCACCCTGCAGCCACAGGTCAAGTGCCAGTGTCATCCTACTACCAAGTTTATGCCCCACCATCACAGCAACAACTTCACCATCCAATTAGTCAGCAGCAATACCCAGTTTATGTAATGCCTGTGAGACCTACACAACCATACAACATGGCATTGCAACCCAATATAGCTGACCCTAATGTGGTAGCCTCAGGTAGGCCACTAATACCCCAAAGTGTTGCTGCCTCAACAGCATACAAGGATGGCACCCCACCTATTTACCCCACTAAGTCAGCTACCCCTCCTGTGACATCAAATCCTGCATTTGTTCAAGTACCTTCCAATCAATTTCAGCAACAATATGTGGGTTTGCCTCAATACCATCATCCTCCACAACCCATTGCTGTAGCTCCCTCAAGTGCTACTAATTATGGTTATGAATATGGTGGTCCTGTGCAAGACCAAGCATACTACACACAACAACAAACTACTGCTCCATTGCTTCCTCAGTACCAATCCATGACCCCAGCAGCAGCTGCTGCAGCACTATCAGATGCTTCAAAACAATTTCCTGCAGACAATATTCAGCAGCCAAATAGAACTACACAGCCGGTATAA 2013 0.46 MDPPPLSAATTATMAPTTIQQNHPDLIETSSPKPFLNGETMNDEALPAVPGAKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRHSSLKDLCSRLSCTILNGRPFTLKYQLPNEDLDNLITVTTDEDLDNMIEEYDRIAAAASPLKPSPSRLRVFLFFTKPESSVSMGSLLDDAKSETWFVDALNNSGILSRGVSDSVATDCFVNLDGVPASGSSNNLDAMGGAESLTLLETNNKVKNVADVVHSTPGSPMLENSSSSSSSSSPSMANLPPIRVRVDENGGSRLQQEKRVGVVEEQFAQMTFTSSGVKADEGFVVSSAVAMPAIPAAVTMASAGVVTTSDNVNRVVSDDERSDHGAPIGSRKPPLPLQLVQPRNSGGLSLPSPDSVASDSSIASANSFSKTVYYHQEQVQAAHLDNKALAMQNAKSEVSDHVTGLQREQVQDPGYTLPQQLDQNQQLQQPYVHSSTHYIHHPAATGQVPVSSYYQVYAPPSQQQLHHPISQQQYPVYVMPVRPTQPYNMALQPNIADPNVVASGRPLIPQSVAASTAYKDGTPPIYPTKSATPPVTSNPAFVQVPSNQFQQQYVGLPQYHHPPQPIAVAPSSATNYGYEYGGPVQDQAYYTQQQTTAPLLPQYQSMTPAAAAAALSDASKQFPADNIQQPNRTTQPV. 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04842 670 MobiDBLite consensus disorder prediction 350 393 - -
Seca10g04842 670 MobiDBLite consensus disorder prediction 10 37 - -
Seca10g04842 670 PANTHER OS05G0427100 PROTEIN-RELATED 31 512 - -
Seca10g04842 670 CDD PB1_UP2 57 160 - -
Seca10g04842 670 MobiDBLite consensus disorder prediction 1 41 - -
Seca10g04842 670 MobiDBLite consensus disorder prediction 251 271 - -
Seca10g04842 670 MobiDBLite consensus disorder prediction 375 393 - -
Seca10g04842 670 SMART PB1_new 68 160 IPR000270 GO:0005515
Seca10g04842 670 ProSiteProfiles PB1 domain profile. 53 160 IPR000270 GO:0005515
Seca10g04842 670 MobiDBLite consensus disorder prediction 247 273 - -
Seca10g04842 670 Gene3D - 73 161 - -
Seca10g04842 670 SUPERFAMILY CAD & PB1 domains 69 171 - -
Seca10g04842 670 Pfam PB1 domain 69 160 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04842 Seca-Chr10 111733296 111736107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04842 53 189 MAP Kinase Kinase Kinase AT5G57610 43.165 3.24e-25 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07835 8 175815135 175818881 Seca10g04842 10 111733296 111736107 ECH
Seca10g04842 10 111733296 111736107 Seca10g04842 10 111733296 111736107 ECH