Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02420 ATGTTCCCTTACAGCTCCAACCCTTACCCTTCCTTCCCCTCTTCATCTTCTTCTCCATTCCTTCCTTTTCCTTTCCTCAACCCTGAAAATGCTTCTGCAACTAACAACACTCTCTTCCATGATCCATTTTCTGTTCCTTACATACCAACCCATCACCACAACACCAATCCAATCCCAGAAACACTGACCAATTTAGTAGATAACTGTGCTGCTTCAGCTGCAGCAATGCCTAAACAGGACCCAAGTGGTGGTGGTGCTCACTATGGCATTTCCTGTTTGCTCACAAAGAAACCAGCAAAGAAAGATAGGCACAGCAAGATTTACACCTCTCAGGGTTTGAGAGACCGAAGGGTGAGGCTTTCCATTGAGATCGCTAGAAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGTAACACCCTTGAGTGGCTTTTCAACAAGTCAAAGAAAGCAATTAAGGAGTTAGCTAAGAGCAAAAACAGCAACAACAGTGATGGCTCATCATCTTCTGAGTGTGAAGACTGTGAAGTGGTTTCAGGGATGAAACAACAACATGAAGCACTCATAGCTGATACTCCAAACCTACTACAACAACAACAACAACAACAACAACAAGGGTTAGATTCAAACGACAAGTCGTTTATATGTGATGCTGCAGGAAAAGAGAGGAAGTTGAAAAGGGCACAGAAGGAACCTGCTTGTGTTCGTGCAAAGATGAAAGAGTCAAGAGAAAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATGTGTAACACTACTGGGAGAGTGCAGCAAGATCACATGAAGAAAAAGTACCCTGCAAGTGAAAACCATCAAATCATTCATCACCTTGAGGATTGTGCAAGATCATCTCCACCTAATAAGCTTGTTCACCCTCACCCTCACCCTCATCATCATCATCACCACCTTGTTGGTGGTAGTGAAACACCAAGAGATGACTTCAATGTTATAGAGGAATCCATTGTGATCAAGAGAAAGTTGAAGCCATCATTGATGTCTTCTTCTTCTTCTCATCATCACCATCACCAAAACATTGCAATCCCTAAGGAAGCAAGTTTCAACAATGACTTCCACTCCTTCCCCAATATGTCTCCAAATTGGGATGCTTCTAATGGTGCTGCCACTGCTCGCTCCAACTTCTGTGCAATAGCCAGCATGAATCTCTCAACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTCTACACTAG 1263 0.4339 MFPYSSNPYPSFPSSSSSPFLPFPFLNPENASATNNTLFHDPFSVPYIPTHHHNTNPIPETLTNLVDNCAASAAAMPKQDPSGGGAHYGISCLLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKKAIKELAKSKNSNNSDGSSSSECEDCEVVSGMKQQHEALIADTPNLLQQQQQQQQQGLDSNDKSFICDAAGKERKLKRAQKEPACVRAKMKESREKARARARERTSNKMCNTTGRVQQDHMKKKYPASENHQIIHHLEDCARSSPPNKLVHPHPHPHHHHHHLVGGSETPRDDFNVIEESIVIKRKLKPSLMSSSSSHHHHHQNIAIPKEASFNNDFHSFPNMSPNWDASNGAATARSNFCAIASMNLSTGLQIFGKSWEECTNPRLH. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02420 420 Pfam TCP family transcription factor 99 263 IPR017887 -
Seca10g02420 420 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 80 376 IPR005333 GO:0003700
Seca10g02420 420 ProSiteProfiles R domain profile. 243 260 IPR017888 -
Seca10g02420 420 ProSiteProfiles TCP domain profile. 100 158 IPR017887 -
Seca10g02420 420 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02420 Seca-Chr10 29310693 29312771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02420 38 262 TCP Transcription Factor Family AT1G67260 39.407 3.17e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca10g02420 TCP 1.3e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02420 10 29310693 29312771 Seca12g01216 12 11920314 11921390 ECH
Seca10g02420 10 29310693 29312771 Seca10g02420 10 29310693 29312771 ECH
Seca12g01216 12 11920314 11921390 Seca10g02420 10 29310693 29312771 ECH