Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02056 ATGCAAAGCTTCAAGACAGCACAATCAAGCTCTCAGCTCTATTGCCACCCCTCCTTCTTGCTTCGGGGAGATGACACCAATCGAAACCCAACGCGTTTCTCTGATCTTGGGGAGCTTCACCATTCCTCTTCTGTCTTTCAGCACCAAGATGCTGTTGATTTAAGCTCAAGCTCTATGTTTAGTGTAAAGTCAAGCAACGTTGTTGTTGGTGGTAGTAACATGCAATATGGGACACTGAACACGAATCTTGGGTCTGCAGAGATTGCTTCAACAGGGGCAGGGTGCTTGGACACAGGGCAGCAGCTAATGTACCACAAGGGAATCACCATGGCCACCTTGCCTTTGGGGAATGGTCATGTTGAGAATTGGGCTGATTCAGGCATGGCAGATAATAGCCAACAGACAGATGATACTTCCACAGATATTGATACTGATGATAAAAACCAATGCAATAGAATTAAGAATGGGGCACAAATGGTCGTGCACTCCAAGGACCAGACAAAGCTCAGAGCTGAAGATCAGAAGACCCTTCGTAGACTGGCTCAGAACAGGGAGGCTGCAAGGAAGAGTCGGTTAAGGAAAAAGGCATATGTACAGCAGTTGGAGAACAGCCGAGCTAGGCTTTCGCAATTAGAACAAGAGCTTCAACGGGCACGTCAGCAGGGTATATTTATTGCAGCTCCAGGGGATCAAGGTCATTTGGCTGTTGGAAATGGTGCCTTGGCCTTTGACATGGACTACGCCCATTGGGTTGATGAGCATCAACGACTGCTGAATGACCTAAGATCAGCTTTAAATTCTCAAATGGGTGATAATGAACTAAATGTTCTTGTAGATGGTGTCATGGCACATTATGATGAATTATTTAGGTTAAAGAGCATAGGGGCAAAGGCTGATGTATTTCATATGCTTTATGGACCTTGGAAGACACCAGTAGAAAGATGTTTCATGTGGCTTGGTGGATTCAGGTCATCTGAACTTCTCAAGATAGTTCAAAATCACCTTGAGCCATTAACAGAACAGCAGTTGATGGGAATTTTGAATCTGCAGCGGTCTTCCCAGCAGGCTGAGGATGCTTTGACTCAAGGCATGGAAGCATTGCAACAAACTCTTATAGAGACACTTTCCTCCACCTCCTTAGGACCCAATGGTACTGGAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGAGCAAGCTTGCCGCACTGGAGAATTTCCTTCGTCAAGCTGATCTGTTGAAGAAGCAAACACTGCAACAGTTGCAAAGAATTTTGACCACACGTCAGACTGCTCGAGCTCTCCTTGTCAGAAATGATTACATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTAGCTCGCCCTAGAGAGTAG 1380 0.4529 MQSFKTAQSSSQLYCHPSFLLRGDDTNRNPTRFSDLGELHHSSSVFQHQDAVDLSSSSMFSVKSSNVVVGGSNMQYGTLNTNLGSAEIASTGAGCLDTGQQLMYHKGITMATLPLGNGHVENWADSGMADNSQQTDDTSTDIDTDDKNQCNRIKNGAQMVVHSKDQTKLRAEDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRARLSQLEQELQRARQQGIFIAAPGDQGHLAVGNGALAFDMDYAHWVDEHQRLLNDLRSALNSQMGDNELNVLVDGVMAHYDELFRLKSIGAKADVFHMLYGPWKTPVERCFMWLGGFRSSELLKIVQNHLEPLTEQQLMGILNLQRSSQQAEDALTQGMEALQQTLIETLSSTSLGPNGTGNVADYMGQMAIAMSKLAALENFLRQADLLKKQTLQQLQRILTTRQTARALLVRNDYISRLRALSSLWLARPRE. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02056 459 PANTHER TRANSCRIPTION FACTOR TGA9 119 459 - -
Seca10g02056 459 FunFam BZIP family transcription factor 174 223 - -
Seca10g02056 459 Pfam Seed dormancy control 258 332 IPR025422 GO:0006351|GO:0043565
Seca10g02056 459 ProSiteProfiles DOG1 domain profile. 240 456 IPR025422 GO:0006351|GO:0043565
Seca10g02056 459 SMART brlzneu 171 240 IPR004827 GO:0003700|GO:0006355
Seca10g02056 459 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Seca10g02056 459 Coils Coil 194 221 - -
Seca10g02056 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Seca10g02056 459 Pfam bZIP transcription factor 174 216 IPR004827 GO:0003700|GO:0006355
Seca10g02056 459 Gene3D - 174 223 - -
Seca10g02056 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Seca10g02056 459 MobiDBLite consensus disorder prediction 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02056 Seca-Chr10 23543359 23547107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02056 3 459 bZIP Transcription Factor Family AT1G68640 57.660 9.72e-172 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca10g02056 DOG1 3e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02056 10 23543359 23547107 Seca10g02056 10 23543359 23547107 ECH