Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02038 ATGCAACCACCTCACTCTTTCTCCTACATATCCTCTTGTGAGAGTAGTAATGCCTTTTTAGAATCTGATGGGGCTTTTGATGAAGCCTCAATCTCCCTATCTCTTGGCCTTCCTGGCCAACAGAACCCCAAACAACTGATCTCTTCCTCAAACCAACCTGCTACTCTGCATCATCATCAACCACACCAAAACCCTACATCTGATGATGATATTGATAATGATCAGAGTGGTGTAACAGTTGCCCTTCACATTGGCCTTCCCACCAGTGGTTCTTCACAAAACACCACCCCTATTAGCAAACCTGATCATCATCATAGTCATTTGGGTTCTTCAGGTCCTATTGAGGGTCAATACTGGATCCCTTCTCCAGCTCAAATCCTCATTGGACCAACCCAGTTTTCTTGCACAGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAGTACAGGAAAGGACCTGAATCTTTAAGAGGAGCAAAACCAGCTTCTTCAATGATGAGGCTGCCCTGTTATTGCTGTGCTGAGGGTTGCAAGAACAACATAGATCATCCAAGGTCAAGGCCTCTCAAGGATTTCAGGACCCTTCAGACTCACTACAAGAGAAAGCATGGAGCAAAGCCTTTTGGGTGCAGAAAATGTGGGAAACCCTTTGCTGTGAGAGGGGACTGGAGAACTCATGAGAAGAACTGTGGGAAGCTTTGGTTCTGCATATGTGGTTCTGATTTCAAGCATAAGAGGTCCCTCAAAGACCATGTTCGTGCCTTTGGGGATGGACATGCTCCACACACTGTTGAAAGCTGTGATCAACAGGAACATTTAGGGGATGAAGAGGATGATGAATGGGAAGGAGAAGGAGAAGAAGATGAAGATGATCACAGCAACAGCAATAACAGTGGAATGATGTTTAGTTTTAATTAA 948 0.4473 MQPPHSFSYISSCESSNAFLESDGAFDEASISLSLGLPGQQNPKQLISSSNQPATLHHHQPHQNPTSDDDIDNDQSGVTVALHIGLPTSGSSQNTTPISKPDHHHSHLGSSGPIEGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMMRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQQEHLGDEEDDEWEGEGEEDEDDHSNSNNSGMMFSFN. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02038 315 FunFam Zinc finger protein WIP2 187 269 - -
Seca10g02038 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Seca10g02038 315 PANTHER ZINC FINGER PROTEIN WIP2 26 289 IPR043584 GO:0003700|GO:0010468
Seca10g02038 315 MobiDBLite consensus disorder prediction 85 99 - -
Seca10g02038 315 SUPERFAMILY beta-beta-alpha zinc fingers 201 238 IPR036236 -
Seca10g02038 315 MobiDBLite consensus disorder prediction 36 115 - -
Seca10g02038 315 MobiDBLite consensus disorder prediction 270 315 - -
Seca10g02038 315 SUPERFAMILY beta-beta-alpha zinc fingers 129 154 IPR036236 -
Seca10g02038 315 Gene3D Classic Zinc Finger 216 288 - -
Seca10g02038 315 MobiDBLite consensus disorder prediction 281 301 - -
Seca10g02038 315 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Seca10g02038 315 MobiDBLite consensus disorder prediction 36 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02038 Seca-Chr10 23358584 23360098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02038 27 274 C2H2 Transcription Factor Family AT1G13290 69.200 2.17e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g02038 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02038 10 23358584 23360098 Seca10g02038 10 23358584 23360098 ECH