Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02031 ATGGCCACTGTTGCAACAAGAGGAATTGGAGTAGGAGTGACAAAGCTCCAACCCCACAAACCCAAGCACAAGTCCTTGTTTCTTGGGCAGAGACTTAGAATTAGACCCTCTGATGAGGCACAAAGCTGTGCAAGACTCATCAGTGTCTCAAACCCAAAAGCCTTTCAAGTGTTTGCACTGGGGGCTGAATGGGTTGACTCAGTTCACAACCTTTTTCTGGGTGTTGGGGTAGGGCTTCCTTGCACTGTCATGGAGTGTGGGGACATAATCTACAGAAGCACTCTTCCCAAGTCCAATGGATTGACAATTACTGTCCCTGGTGTGATTTTGGCTTTGGGTGCTCTCTCTTACCTTTGGGCTACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTCAGACCCACTTACAAAAAGGATGATTTTGTTCTGGGGAAGAAATTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGTCACTGACCAACAACAACAAGTCCTCTTCAAAGGAAGGTGACCTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGAGTAAGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGTTCTTCAAAGAAAGCTGCTGAATACTGGCTCATATGGCGGTTTGAAGGGGGTGCCACCTTAGCGGATCTTTTGCAGACCCCAGTGACAGTGCCAAAATTTCAGGTTGAAACATTGATTCTGGGTGAGGTCCAGGACTTGCCCAAGGGATTGGAAAGAGAAAATAGAATTATTCAAACAATCATGAGGCAGCTGTTGTTTGCATTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAAAACATTATTTTCTCTGAAGGGTCTCGGTCATTCAAAATCATTGATCTTGGAGCTGCTGCAGACCTGCGAGTTGGCATCAACTACATTCCTAAGGAGTTTCTTTTGGATCCAAGGTATCTTCTTTGA 1035 0.4464 MATVATRGIGVGVTKLQPHKPKHKSLFLGQRLRIRPSDEAQSCARLISVSNPKAFQVFALGAEWVDSVHNLFLGVGVGLPCTVMECGDIIYRSTLPKSNGLTITVPGVILALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKLGEGSFGVVYRVSLTNNNKSSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSSKKAAEYWLIWRFEGGATLADLLQTPVTVPKFQVETLILGEVQDLPKGLERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRSFKIIDLGAAADLRVGINYIPKEFLLDPRYLL. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02031 344 Gene3D Transferase(Phosphotransferase) domain 1 263 343 - -
Seca10g02031 344 ProSitePatterns Protein kinases ATP-binding region signature. 156 185 IPR017441 GO:0005524
Seca10g02031 344 SMART serkin_6 150 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02031 344 SUPERFAMILY Protein kinase-like (PK-like) 134 339 IPR011009 -
Seca10g02031 344 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 49 342 - -
Seca10g02031 344 Gene3D Phosphorylase Kinase; domain 1 136 232 - -
Seca10g02031 344 Pfam Protein kinase domain 151 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02031 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Seca10g02031 344 ProSiteProfiles Protein kinase domain profile. 150 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02031 Seca-Chr10 23210990 23213966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02031 228 325 MAP Kinase Kinase Kinase Kinase AT3G15220 33.673 2.99e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Seca10g02031 Pkinase 5.7e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02031 10 23210990 23213966 Seca10g02031 10 23210990 23213966 ECH