Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02018 ATGAAAAAAGAAGAAGATCAAGGACAGTGTTCTTCCCAAGCAATCAACAACATGAACAACATTTATCAAGAGCAGCTACTCCTTCAGCAACAGATGCAGCAAAACAGTAGTGGTGACATATTTGGAAGTAGTGGAAGAGGGTTAATGTTCCCTGAAGTTTCACCAATCTTACCACCATGGTCCATGCCACCGGTTCACTCCTTCAACCCGGTCCGATCAGACCATGATCCATCCCCATCATTTCTTGCCCCTCCTCCTCCTCCAGTACCTTATGCAAGCTTTTTCAATAGAAGGGTTCCATCTCTTCAGTTTGCATATCATGAGGGTCCATCTTCTGAGCATCTAAGGATCATATCTGATACTCTTGTTGGACCCATGGTTCAACCCGGTTCAGCTCCCTTTGGACTCCAAGCAGAGTTAGGCAAAATGACTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTCCGCAGCTTGTTGCCTAACACAACCAAAACAGATAAGGCTTCACTGTTAGCGGAAGTGATTCAGCATGTGAAGGAACTGAAGCGTCAAACCTCATTGATAGCGGAAACGAGTCCAGTGCCAACTGAATCTGATGAGTTAACCGTTGATGCATCTGATGAGGATGGAAAGTTTGTGATAAAAGCCTCATTGTGCTGTGAAGATAGATCAGATCTGTTACCTGATCTCATCAAGACACTGAAAGCGTTGAGGTTGAGAACGCTGAAAGCTGAGATCACGACGCTTGGAGGGCGTGTGAAGAACGTGCTGTTCATAACTGGAGATGAGGATTCAAATTGCAATAATAATAATAATAATAATGGAGATCAACAACAGTATTGTATTAGCTCAATACAAGAAGCGCTTAAGGCAGTTATGGAGAAGAGTGGTGGGGACGAATCAGCTTCTGGGAATGTTAAACGTCAAAGGACTAATAATATCAATATCCTTGAACAGAGGTCTTTATGA 1038 0.4374 MKKEEDQGQCSSQAINNMNNIYQEQLLLQQQMQQNSSGDIFGSSGRGLMFPEVSPILPPWSMPPVHSFNPVRSDHDPSPSFLAPPPPPVPYASFFNRRVPSLQFAYHEGPSSEHLRIISDTLVGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTESDELTVDASDEDGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGDEDSNCNNNNNNNGDQQQYCISSIQEALKAVMEKSGGDESASGNVKRQRTNNINILEQRSL. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02018 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 211 IPR036638 GO:0046983
Seca10g02018 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Seca10g02018 345 PANTHER TRANSCRIPTION FACTOR BHLH30 34 339 IPR045847 GO:0003700|GO:0006355
Seca10g02018 345 SMART finulus 161 210 IPR011598 GO:0046983
Seca10g02018 345 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Seca10g02018 345 FunFam transcription factor bHLH30 150 213 - -
Seca10g02018 345 CDD bHLH_AtAIG1_like 150 228 - -
Seca10g02018 345 Gene3D - 150 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02018 Seca-Chr10 23031525 23034775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02018 11 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.459 3.69e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g02018 HLH 2.3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02018 10 23031525 23034775 Seca10g02018 10 23031525 23034775 ECH