Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02015 ATGGCGACACTATCCTCTCTCTTTCTCTTTTTTTTCTTCTTCCATTTTTGTTACTCCACCGAATACCTAAAGCTACCATTGGTAAAGAGGAACACACACTCGTCGCCAGCTGAGCTTCTATCCGCCGACCTCCGCCGCATCTCCGGCAGACGGAGAGCCGTAAAGTCCCCGTTAGTTTCCGGTGCTTTCACCGGCTCCGGCCAGTACTTCGCTGATCTTCGAATCGGGTCTCCGCCGCAACGCCTCCTCCTCGTTGTGGACACAGGCAGCGACCTCGTGTGGGTCAAATGCTCCGCCTGTAGAAACTGCTCCGAACACCGACCCGGATCCGCATTCCTCGCCCGACACTCAGAAACGTTCTCCTCTTACCACTGCTACGACTCGCCTTGTCGACTCATCCCTCACCCAAAACCCGAACCGCGTTGCAACCGTACCCGGCTCCACAGCCCGTGCCGCTACGAGTTTTCCTACGCGGACGGGTCCCTAACAAGCGGGTTCTTCTCGAAAGAAACGACGACGTTCAACACGAGCACCGGCAAGGAAGTGAAAATTAAAGAACTATCGTTCGGGTGTGGGTTTCGGGTCTCTGGCCCGAGCGTGACTGGTTCGAGCTTCAACGGTGCACAGGGTGTAATGGGCTTGGGCCGTGGACCCATTTCGTTTAGTTCTCAATTGGGTCGAAGGTTCGGGAACATATTTTCTTACTGTCTACTCGACTACACCATATCACCCCCTCCGAAAAGTTACCTCACTATCGGCGGTTCCAGCAACGTCGTTTCGAGCAAGTTCAGTTACACACCGTTGCTAACTAACTCACTCTCTCCCACATTTTACTACATTGCCATCCAGAGCGTAACCGTCGACGGTGCGAAATTACCGATAAGCCCTTCCGTTTGGTCTATTGACGAGCAGGGCAACGGCGGCACCGTCGTAGACTCCGGCACCACACTGACGTTTTTAGTGGAGCCGGCTTACAGGCAGGTGCTGGCGGCATTCCGTCGGCGCGTGAAGCTTCCGGCAGCTGATGATCCCGCGCTTGGGTTCGACTTGTGTGTGAACGTTTCCGGCGTGTCGAAGCCGAGGCTGCCGAAGCTGAGGTTCGGTATTGCTGGAAAATCGGTGTTGTCGCCGCCGGCGAGGAACTATTTCATCGAGGTGGTGGATCGGGTCTTGTGTCTGGCGATCCAACCCGTGAAACCGGGTTCCGGATTTTCGGTTATCGGGAATCTGATGCAGCAAGGTTACTTGTTTGAATTCGATATGGACAGGTCGCGGCTCGGGTTTTCGCGTCACGGATGCGCGGTTCGCTGA 1311 0.553 MATLSSLFLFFFFFHFCYSTEYLKLPLVKRNTHSSPAELLSADLRRISGRRRAVKSPLVSGAFTGSGQYFADLRIGSPPQRLLLVVDTGSDLVWVKCSACRNCSEHRPGSAFLARHSETFSSYHCYDSPCRLIPHPKPEPRCNRTRLHSPCRYEFSYADGSLTSGFFSKETTTFNTSTGKEVKIKELSFGCGFRVSGPSVTGSSFNGAQGVMGLGRGPISFSSQLGRRFGNIFSYCLLDYTISPPPKSYLTIGGSSNVVSSKFSYTPLLTNSLSPTFYYIAIQSVTVDGAKLPISPSVWSIDEQGNGGTVVDSGTTLTFLVEPAYRQVLAAFRRRVKLPAADDPALGFDLCVNVSGVSKPRLPKLRFGIAGKSVLSPPARNYFIEVVDRVLCLAIQPVKPGSGFSVIGNLMQQGYLFEFDMDRSRLGFSRHGCAVR. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02015 436 ProSiteProfiles Peptidase family A1 domain profile. 69 429 IPR033121 -
Seca10g02015 436 Gene3D Acid Proteases 252 435 IPR021109 -
Seca10g02015 436 FunFam Aspartyl protease family protein 259 435 - -
Seca10g02015 436 Pfam Xylanase inhibitor N-terminal 69 254 IPR032861 -
Seca10g02015 436 SUPERFAMILY Acid proteases 62 433 IPR021109 -
Seca10g02015 436 Gene3D Acid Proteases 45 251 IPR021109 -
Seca10g02015 436 PANTHER OS07G0603500 PROTEIN-RELATED 34 433 - -
Seca10g02015 436 Pfam Xylanase inhibitor C-terminal 278 429 IPR032799 -
Seca10g02015 436 PRINTS Pepsin (A1) aspartic protease family signature 309 320 IPR001461 GO:0004190|GO:0006508
Seca10g02015 436 PRINTS Pepsin (A1) aspartic protease family signature 75 95 IPR001461 GO:0004190|GO:0006508
Seca10g02015 436 PRINTS Pepsin (A1) aspartic protease family signature 405 420 IPR001461 GO:0004190|GO:0006508
Seca10g02015 436 FunFam Aspartyl protease family protein 2 49 253 - -
Seca10g02015 436 CDD pepsin_A_like_plant 68 433 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02015 Seca-Chr10 22978904 22980214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02015 59 433 Miscellaneous Gene Families AT1G77480 27.020 7.92e-27 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02015 10 22978904 22980214 Seca10g02015 10 22978904 22980214 ECH