Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02013 ATGAAAGAGAAGGTGCAAAAGTATGAAAGCATTCCCATCTCAAAGCAAACTCTTATCTTCAACGGTCAAGTTCTCCCAGATGATGGTGACATCTGGAAATGTGAAATCTTTCAGAACTCGCGCATTCAGCTCATTGTTGCTCCAGACTCAGATAAATCTCCATCCGCCAAGATTCAACTTAATGTTAAAATAACTTCATCTAACGTGCATATTCCTCTTGAAATGGACCTAAACGACACCGTTTTGAAACTGAAGGAAAAAATTCTTGAAATGATGGAAAATCCTGTTCCAGTGAATAGACTCATCTTGCATGTAACAGGTACAGAATTGCATGATCATCAATTGCTACGAGATTGTGATGTTTCAGATAATACTGAGATTGATGTGAGTTTCAGACCATCACCACCCACAACTTCAGCGAGTGGTGGAAACGTAGGCGGATCAAAGAAGTTGAAACTCATGGTGTTGCCTAAGAGTGGCACAAAGAAGATACCTGTGGAAGTTAATGCCTCTGATAATGCTGGTGCTCAAGTTTCTGGTGCTTTTGGAATCATCACTCATCAACAAAATTTAGAATCATTGGAAAGAGCAAAGAAAGATTTTTCTCCCTTGCCCTCTGCTTCCATTTCAAGTTTGTCAATGAGTAACCCAATAGATTGGAGCAGTGTTCTACTGGACACCATCAATGAAGATGCTAGGCATCTTCTTACTTCGCTATCAAGTCAATTCAGTAATATGAGATCATCAGTTAAATTTGATATTAAAGGAAAATCAGTTACTCTCTTCATGCCTGGTTTTGACAAATCAGAGATCAAGCTATACCAAATCATATTTGTTCCACATAGACTGCAATTGTCTACTATCCGCACTCTTAGTACCCAACAAACTAAGAGTATTGTTGCACGTGTCAAACGCGTTCGCAATGAAGCACTTAGAGTGCGATTAGTAGAAACCCGCAGTCCAGTCGTGGTAGCTAGCTTCTTGCTGCAGTGGGAACATTCTTGCCGCTTCGATTGGGATTCTGTTGGAGTTCTTGCTGCCTTCCCTTCCCGTTCAGAATCAAAGAAAGCCCTGGCCTCCAGGCGAGACAATATGGATGTAATTTTTGAGGTAGAAAGAGGGAGTACATTTTCCATTGAAGTGGGCTTCTTCGACACAATCCTAGAGATGAAAGAGAAGGTGCAAAAGTATGAAAGCATTCCCATCTCAAAGCAAACTCTTATCTTCAACGGTCAAGTTCTCCCAGATGATGGTGACATCTGGAAATGTGAAATCTTTCAGAACTCGCGCATTCAGCTCATTGTTGCTCCAGACTCAGATAAATCTCCATCCACCAAGATTCAACTTAATGTTAAAATAACTTCATCTAACGTGCATATTCCTCTTGAAATGGACCTAAACGACACCGTTTTGAAACTGAAGGAAAAAATTCATGAAATAATGGAAAATCCTGTTCCAGTGCATAGACTCATCTTGCATTTGCATGCAACAGCTACAGAATTGTATGATCATCAATTGCTACGAGATTGTCATAATATTTCAGATAATGCTGAGATTGATGTGAGTTTTAGACTACCCACAACTATATTGAGGAGTGGTGGAAATGTAGGAGGATCAAAGAAGTTGAAAGTCATGGTGTTGCCTTATAAAGATGGGGCAAAGAAGATACCTGTGGAAGTCAATGCCTCTGATAAAGTAGGAGAATTAAGAAAGGAGTTGGAAAACCTAAATCAGAGACTTGAGATTCATCTCCCTCGAGATGGTCGTTATTTTTTCATTCACAAGCAAAGTGTTATGGATGATGATAGATCTTTCCGTTCGCACCATGTTGGACAGGGTGACACCATTGACATTTTCCCTGGTTATGTGACTGATTCATGA 1881 0.4009 MKEKVQKYESIPISKQTLIFNGQVLPDDGDIWKCEIFQNSRIQLIVAPDSDKSPSAKIQLNVKITSSNVHIPLEMDLNDTVLKLKEKILEMMENPVPVNRLILHVTGTELHDHQLLRDCDVSDNTEIDVSFRPSPPTTSASGGNVGGSKKLKLMVLPKSGTKKIPVEVNASDNAGAQVSGAFGIITHQQNLESLERAKKDFSPLPSASISSLSMSNPIDWSSVLLDTINEDARHLLTSLSSQFSNMRSSVKFDIKGKSVTLFMPGFDKSEIKLYQIIFVPHRLQLSTIRTLSTQQTKSIVARVKRVRNEALRVRLVETRSPVVVASFLLQWEHSCRFDWDSVGVLAAFPSRSESKKALASRRDNMDVIFEVERGSTFSIEVGFFDTILEMKEKVQKYESIPISKQTLIFNGQVLPDDGDIWKCEIFQNSRIQLIVAPDSDKSPSTKIQLNVKITSSNVHIPLEMDLNDTVLKLKEKIHEIMENPVPVHRLILHLHATATELYDHQLLRDCHNISDNAEIDVSFRLPTTILRSGGNVGGSKKLKVMVLPYKDGAKKIPVEVNASDKVGELRKELENLNQRLEIHLPRDGRYFFIHKQSVMDDDRSFRSHHVGQGDTIDIFPGYVTDS. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02013 626 SUPERFAMILY Ubiquitin-like 442 527 IPR029071 -
Seca10g02013 626 ProSitePatterns Ubiquitin domain signature. 391 416 IPR019954 -
Seca10g02013 626 ProSiteProfiles Ubiquitin domain profile. 365 435 IPR000626 GO:0005515
Seca10g02013 626 PANTHER UV EXCISION REPAIR PROTEIN RAD23 365 454 - -
Seca10g02013 626 Gene3D - 1 52 - -
Seca10g02013 626 ProSiteProfiles Ubiquitin domain profile. 1 46 IPR000626 GO:0005515
Seca10g02013 626 CDD Ubl_ubiquitin_like 60 129 - -
Seca10g02013 626 ProSitePatterns Ubiquitin domain signature. 2 27 IPR019954 -
Seca10g02013 626 Gene3D - 446 523 - -
Seca10g02013 626 SUPERFAMILY Ubiquitin-like 360 441 IPR029071 -
Seca10g02013 626 FunFam Ubiquitin-like superfamily protein 365 436 - -
Seca10g02013 626 CDD Ubl_ubiquitin_like 554 616 - -
Seca10g02013 626 ProSiteProfiles Ubiquitin domain profile. 447 511 IPR000626 GO:0005515
Seca10g02013 626 ProSiteProfiles Ubiquitin domain profile. 58 132 IPR000626 GO:0005515
Seca10g02013 626 SUPERFAMILY Ubiquitin-like 53 140 IPR029071 -
Seca10g02013 626 CDD Ubl_ubiquitin_like 2 45 - -
Seca10g02013 626 SMART ubq_7 60 132 IPR000626 GO:0005515
Seca10g02013 626 SMART ubq_7 449 524 IPR000626 GO:0005515
Seca10g02013 626 SMART ubq_7 365 436 IPR000626 GO:0005515
Seca10g02013 626 SMART ubq_7 545 621 IPR000626 GO:0005515
Seca10g02013 626 Pfam Ubiquitin family 61 133 IPR000626 GO:0005515
Seca10g02013 626 Pfam Ubiquitin family 2 47 IPR000626 GO:0005515
Seca10g02013 626 Pfam Ubiquitin family 371 436 IPR000626 GO:0005515
Seca10g02013 626 Pfam Ubiquitin family 450 525 IPR000626 GO:0005515
Seca10g02013 626 SUPERFAMILY Ubiquitin-like 540 619 IPR029071 -
Seca10g02013 626 Gene3D - 352 445 - -
Seca10g02013 626 Gene3D - 53 137 - -
Seca10g02013 626 Coils Coil 559 579 - -
Seca10g02013 626 SUPERFAMILY Ubiquitin-like 1 52 IPR029071 -
Seca10g02013 626 CDD Ubl_ubiquitin_like 449 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02013 Seca-Chr10 22951065 22961358 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02013 10 22951065 22961358 Seca10g02013 10 22951065 22961358 ECH