Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01996 ATGCTATTTTCTTCCCTTTCTCTGTTACCATTCCAACCACTCTCTCCCTCTCTGGTTCTCTCTCTCACACACACACACCCTTCACTCTCTCTCCTTCCTCTTCTTCTTTCATATTCTTCAGTGTTTCTGATTTGGTCTTGTCGAGTGGCAATGACGGACCACACTGACGATATTGCAGAGGAAATCTCGTTTCAGAGCTTCGATGATGACTGTAGATTGCTCGGCAATCTTCTCAACGACGTTTTGCACCGAGAGGTTGGCACCGTCTTCGTTGAGAAACTAGAAAAAATTCGAACCCTTGCACAGAGTGCTTGCAATATGAGACAAGCAGGGATTGAGGACATGGCAGAACTGCTAGAGAAGCAGTTGGCTTCAGAGTTATCCAAGATGACGTTAGAAGAAGCTCTGACCCTTGCTCGTGCCTTCAGCCATTATCTTACTTTGACGGGCATAGCTGAGACCCACCATAGGGTTCGTAGAGGAGGAAATATAACAAATGTTGCAAAATCTTGTGATGACATCTTTAACCAACTGGTGCAAGGTGGAGTTTCCCCAGATGAGCTTTATAACACAGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACTGCTCATCCCACACAAATTAATCGCCGTACCTTGCAATACAAACATGTAAAAATTGCGCATCTTTTGGATTATAATGATCGACCTGATCTTAGCCTTGAAGATCGAGAAATGGTGATTGAAGACCTGGTGAGAGAGATAACTGCAATATGGCAGACAGATGAGCTTAGGCGCTTGAATATTGTGGAGCAGTCACTTTGGAAAGCTGTTCCTCATTATTTACGTCGAGTCAGCAATGCTTTAAAGAAGCATACGGGAAAACCATTACCATTGACTTGCACTCCGATAAAGTTTGGATCTTGGATGGGAGGTGATAGAGATGGAAACCCAAATGTGACAGCAAAGGTCACAAAAGATGTTTCACTTTTGTCAAGATGGATGGCAATTGACCTCTATGTTCGGGAAGTGGATAGCCTGAGATTTGAGCTATCCATGAACCAGTGCTCTGATAAGTTGTCTAGACTGGCACATACAATATTAGAAGAAGCTAACCAGGAGAATCACCATGAGCATTGGAATCAATCTGTGAGTAGAAGTCAGTTGAAACAGAAAAATCAACAAACTTCATCACTTCCAACTAAACTTCCAGCTGGAGCTCATTTACCCTCTTGTGCTGACAATGGCGGATCTGAGTATCCTAGGCTCGACATCCCAGGACCTGATTACAATCAACTCAATCACAAGGATGGTAAGATTTCAAGTTCAACTACAAGCAATGGTGGAAGTGGAAATATTCGTTCATCACCCGCAAATTCAACAAATTCCAATGCTTCTTCATCAGTTGGGATGACGCGCTCTCCTTCTTTCAACTCCACTCAACTTCTTGCTCAGAGAAAATTGTATGCAGAATCCCAGATAGGAAGATCCAGTTTTCAGAAGCTTTTGGAGCCAAAGCTCCCTCAACTTCCTGGAATTGCTCCTTATAGAGTTGTCCTCGGGAATGTAAAAGATAAGCTTCTAAGAACTCGCAGACGGTTGGAGCTTCTTCTTGAGGATGGTCTATGCGAAAACGATCCTTTTGATTACTATGAAACAACTGATCAGCTTTTAGAACCTCTGCTCCTCTGTTATGAATCTCTGCAATCAAGTGGATCCGGGGCGCTAGCTGATGGTCGACTTGCTGATCTGATTCGAAGAGTTGCTACCTTTGGCATGATGTTAATGAAGATTGACTTGCGTCAGGAATCTGGAAGACATGCTGAAACACTTGATGCAATTACAAGGTATTTGGATATGGGTACATACAGTGAATGGGATGAAGAAAAGAAATTGGACTTCTTAAGCAGAGAACTGAAAGGGAAAAGGCCACTGGTTCCTCTTAGTATAGAGGTTGCTCCAGATGTTAAAGAAGTCTTGGATACATTCCGAATTGCTGCTGAGCTAGGGAGTGATTCACTTGGAGCCTATGTTATCTCTATGGCCTCAAATGCAAGTGATGTCCTTGCAGTGGAGCTTTTACAAAAAGATGCACGACTTGCTGTTAGTGGGGAGTTAGGAAGACCATGTCCTGGTCGAACGCTACGGGTGGTTCCTCTATTTGAAACTGTGAAGGACCTGAGAGGAGCTGGTTCAGTCATCAGAAAACTTTTATCAATAGATTGGTACCGCCAACACGTCATTAAAAACCATAATGGGCAACAAGAGGTTATGGTTGGGTATTCTGATTCTGGTAAAGATGCTGGGCGCTTTACTGCTGGTTGGGAACTTTATAAAGCTCAGGAGGATGTTGTGGCTGCTTGCAACGAGTATGGTATTAAGGTCACCCTGTTCCATGGTCGTGGAGGGAGTATTGGACGTGGTGGTGGCCCAACGTATATGGCTATTCAGTCCCAACCACCTGGCTCTGTGATGGGAACCCTTCGGTCTACTGAACAGGGAGAGATGGTACAGGCCAAGTTTGGGTTACCACAAACAGCTATTAGACAGCTTGAAATATACACAACAGCTGTGCTACTTGCCACCCTTCGTCCACCTCAACCACCCCGAGAAGAAAAATGGCGTAATCTCATGGAAGACATTTCTAAAATCAGTTGCCAGAGTTACCGCAGTGTAGTCTATGAAAATCCAGAATTCCTGTCCTACTTCCATGAAGCCACACCTCAATCAGAGCTTGGCTTCCTTAACATAGGAAGCCGCCCCACGAGAAGAAAGAGCTCAACAGGAATCGGACACCTTCGTGCCATACCTTGGATATTTGCATGGACTCAAACCAGATTTGTTCTTCCAGCTTGGCTTGGAGTTGGAGCAGGTATAAAAGGTGCTTGTGAGAAAGGACAAACACAAGACCTAAAAGCCATGTACAAAGAGTGGCCTTTCTTTCAATGTACAATAGACCTCATTGAGATGGTTTTAGGAAAAGCAGATAGTCATATTGCTAAGCACTATGATGAAGTTCTTGTGCCAGAGAAGAGACAAGAGCTTGGTCGTCAACTAAGGAGCGAGCTCATAACAACTGGCAAGTTTGTACTAGTGATTAGTGGACACGAGAAACTTCTCCAGAATAATAGGAGCTTAAGGAGGTTGATTGAGAGTAGACTTCCTTTACTCAATCCATTGAACATGTTGCAGGTGGAGATACTTAAAAGGTTAAGATGTGATGATGACAACCTTAAGGCCAGAGATGCTTTGCTTATCACCATTAATGGTATTGCTGCTGGGATGAGAAACACAGGTTAA 3279 0.4379 MLFSSLSLLPFQPLSPSLVLSLTHTHPSLSLLPLLLSYSSVFLIWSCRVAMTDHTDDIAEEISFQSFDDDCRLLGNLLNDVLHREVGTVFVEKLEKIRTLAQSACNMRQAGIEDMAELLEKQLASELSKMTLEEALTLARAFSHYLTLTGIAETHHRVRRGGNITNVAKSCDDIFNQLVQGGVSPDELYNTVCKQEVEIVLTAHPTQINRRTLQYKHVKIAHLLDYNDRPDLSLEDREMVIEDLVREITAIWQTDELRRLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYVREVDSLRFELSMNQCSDKLSRLAHTILEEANQENHHEHWNQSVSRSQLKQKNQQTSSLPTKLPAGAHLPSCADNGGSEYPRLDIPGPDYNQLNHKDGKISSSTTSNGGSGNIRSSPANSTNSNASSSVGMTRSPSFNSTQLLAQRKLYAESQIGRSSFQKLLEPKLPQLPGIAPYRVVLGNVKDKLLRTRRRLELLLEDGLCENDPFDYYETTDQLLEPLLLCYESLQSSGSGALADGRLADLIRRVATFGMMLMKIDLRQESGRHAETLDAITRYLDMGTYSEWDEEKKLDFLSRELKGKRPLVPLSIEVAPDVKEVLDTFRIAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGRTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRQHVIKNHNGQQEVMVGYSDSGKDAGRFTAGWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTYMAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAIRQLEIYTTAVLLATLRPPQPPREEKWRNLMEDISKISCQSYRSVVYENPEFLSYFHEATPQSELGFLNIGSRPTRRKSSTGIGHLRAIPWIFAWTQTRFVLPAWLGVGAGIKGACEKGQTQDLKAMYKEWPFFQCTIDLIEMVLGKADSHIAKHYDEVLVPEKRQELGRQLRSELITTGKFVLVISGHEKLLQNNRSLRRLIESRLPLLNPLNMLQVEILKRLRCDDDNLKARDALLITINGIAAGMRNTG. 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01996 1092 PRINTS Phosphoenolpyruvate carboxylase signature 199 212 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca10g01996 1092 PRINTS Phosphoenolpyruvate carboxylase signature 299 314 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca10g01996 1092 Pfam Phosphoenolpyruvate carboxylase 69 374 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca10g01996 1092 Pfam Phosphoenolpyruvate carboxylase 500 1092 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca10g01996 1092 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 200 211 IPR018129 -
Seca10g01996 1092 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 67 1092 IPR015813 GO:0003824
Seca10g01996 1092 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 54 1092 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca10g01996 1092 Gene3D Phosphoenolpyruvate/pyruvate domain 327 394 - -
Seca10g01996 1092 Gene3D Phosphoenolpyruvate/pyruvate domain 464 586 - -
Seca10g01996 1092 Hamap Phosphoenolpyruvate carboxylase [ppc]. 59 1092 IPR022805 GO:0006099|GO:0008964|GO:0015977
Seca10g01996 1092 MobiDBLite consensus disorder prediction 367 469 - -
Seca10g01996 1092 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 750 762 IPR033129 -
Seca10g01996 1092 FunFam Phosphoenolpyruvate carboxylase 4 466 586 - -
Seca10g01996 1092 MobiDBLite consensus disorder prediction 377 395 - -
Seca10g01996 1092 MobiDBLite consensus disorder prediction 428 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01996 Seca-Chr10 22705797 22717247 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01996 10 22705797 22717247 Seca10g01996 10 22705797 22717247 ECH