Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01887 ATGAGCTTCTCTCACTACATGGATGATGAATATGAGAAACTCTTCCGGAGAGTGAACCCTCCCAGGGTTGTAATTGATAATGAATCCTGCAAGAATGCAACTGTTATACGGGTTGATAGTGCAAACAAATACGGAATACTTCTTGAAGTTGTACAGATCCTCACTGATCTAAATCTCATCATAACTAAGGCTTACATATCCTCAGATGGTGGATGGTTCATGGATGTTTTTAATGTCACTGGCCAAGATGGAAACAAGGTTACAGATGAAGCCATTTTAGATTACATTCGAAAGTCTCTTGGTCCGGAATCTTGTGTTACACCTCCCATGAGGTCTGTTGGAGTTAAGCAAACAATGGATGACACTGTAATAGAACTTATGGGAAGTGATAGGGCAGGACTGCTTTCAGAAGTGAGTGCTGTTCTAACCAATCTCAAGTGCAATATAGTGAATGCAGAGGTGTGGACTCACAACACCCGTGCAGCAGCTGTGATGCATGTGAATGATGAAGAGACAGGGTCTGCTATAACTGACCCTCAGAGGCTTTCTCTAATCAAGGAGCTTCTATGTAATGTGCTTGGTGGTGGCAATAAGAAGAGGAGAGCCAAGACTGTTGTTGCTGATGAAGTAACTCATACTGATAGAAGGCTTCATCAGATGATGTTTGCTGATAGGGATTATGAACGTGTTGATGATGATGACTTAGATGAGAAGCAAAGACCAAATGTGAATGTAGTGAATTGGTCTGACAAGGATTATTCCGTAGTTACTATCCAATCTAAGGATAGGCCAAAGCTTCTCTTTGACACGGTTTGTACTTTGACAGACATGCAATATGTGGTTTTTCACGCAAATATTGATGCTGAGGGGCCACAAGCATATCAGGAATATTACATCAAGCATATAGACGGGTCCCCTGTAAAGTCAGATGCAGAAAGACAAAGAGTGATTCAATGTCTTGAAGCTGCAATTGAGAGAAGAGTTTCTGAGGGTTTGAAGCTAGAACTCTGCACCACCGACAGAGTTGGACTACTATCTGATGTAACACGAATCTTTAGAGAGAACAGCCTCACAGTTACAAGGGCAGAAGTTAGCACAAAAGGAGGAAAAGCTGTTAACACCTTCTATGTTCGTGGTGCTTCTGGTTGCCTTGTTGATTCCAAGACCATAGAATCCATTAGGCAAACAATTGGTAACACTATACTTAAAGTAAAGGGTAGCCCTGAAGACTCAAAATCTGTTCCACAGGATTCTCCTACTAGATCTATCTTTAGTGGCCTTTTCAAGTCCAGATCATTTGTTAACTTTGGCTTGGTTAAGTCCTATTCTTGA 1332 0.4144 MSFSHYMDDEYEKLFRRVNPPRVVIDNESCKNATVIRVDSANKYGILLEVVQILTDLNLIITKAYISSDGGWFMDVFNVTGQDGNKVTDEAILDYIRKSLGPESCVTPPMRSVGVKQTMDDTVIELMGSDRAGLLSEVSAVLTNLKCNIVNAEVWTHNTRAAAVMHVNDEETGSAITDPQRLSLIKELLCNVLGGGNKKRRAKTVVADEVTHTDRRLHQMMFADRDYERVDDDDLDEKQRPNVNVVNWSDKDYSVVTIQSKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPQAYQEYYIKHIDGSPVKSDAERQRVIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVSTKGGKAVNTFYVRGASGCLVDSKTIESIRQTIGNTILKVKGSPEDSKSVPQDSPTRSIFSGLFKSRSFVNFGLVKSYS. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01887 443 SUPERFAMILY ACT-like 118 190 IPR045865 -
Seca10g01887 443 Gene3D - 332 405 - -
Seca10g01887 443 Pfam ACT domain 34 94 IPR002912 -
Seca10g01887 443 Pfam ACT domain 122 175 IPR002912 -
Seca10g01887 443 SUPERFAMILY ACT-like 329 398 IPR045865 -
Seca10g01887 443 Gene3D - 118 190 - -
Seca10g01887 443 ProSiteProfiles ACT domain profile. 123 203 IPR002912 -
Seca10g01887 443 ProSiteProfiles ACT domain profile. 333 409 IPR002912 -
Seca10g01887 443 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 6 406 IPR040217 -
Seca10g01887 443 CDD ACT_ACR_3 253 327 - -
Seca10g01887 443 CDD ACT_ACR_1 33 103 - -
Seca10g01887 443 ProSiteProfiles ACT domain profile. 35 114 IPR002912 -
Seca10g01887 443 SUPERFAMILY ACT-like 30 98 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01887 Seca-Chr10 20978901 20982865 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01887 10 20978901 20982865 Seca10g01887 10 20978901 20982865 ECH